G72422


Basic Information

Item Value
gene id G72422
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28651414 ~ 28651621 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85843
AGAAAAGGTACAAAACTATACCATCAAGGGTACAGCTCTTGTGTACCTTTAGTGCATGTTGTGTACTTTTTAAAGCATTACTCTACAAACTAATTATGGCACTTTTTAAcgttaattatttaaaaaatctctaCAGATTCATTTTAAAGCCTTCGACAGGTTATTTCACTGTGTAGAGCACTATTCTGTTTATGTATTAGAGCCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85843 True 208 lncRNA 0.33 1 28651414 28651621

Neighbor

gene id symbol gene type direction distance location
LOC113540233 NA coding upstream 40257 28602905 ~ 28611157 (+)
rnf32 rnf32 coding upstream 62795 28558278 ~ 28588619 (+)
rbm33a rbm33 coding upstream 182562 28443778 ~ 28468852 (+)
en2a en2 coding upstream 251273 28393936 ~ 28400141 (+)
LOC113540125 LOC108267475 coding upstream 391160 28253028 ~ 28260254 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding downstream 3135 28654756 ~ 28666631 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding downstream 39475 28691096 ~ 28699416 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding downstream 64643 28716264 ~ 28722857 (+)
si:ch73-344o19.1 NA coding downstream 87505 28739126 ~ 28745646 (+)
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding downstream 128128 28779749 ~ 28784107 (+)
G72404 NA non-coding upstream 14213 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding upstream 23441 28623240 ~ 28627973 (+)
G72378 NA non-coding upstream 72464 28574922 ~ 28578950 (+)
G72336 NA non-coding upstream 179649 28468948 ~ 28471765 (+)
G72276 LOC108267477 non-coding upstream 529272 28114451 ~ 28122142 (+)
G72428 NA non-coding downstream 6655 28658276 ~ 28658536 (+)
G72472 NA non-coding downstream 135996 28787617 ~ 28791836 (+)
G72869 NA non-coding downstream 210795 28862416 ~ 28901261 (+)
G72872 NA non-coding downstream 221982 28873603 ~ 28873988 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding downstream 263008 28914629 ~ 28915258 (+)
insig1 insig1 other upstream 267992 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 313241 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1245016 27384807 ~ 27406398 (+)
gng7 NA other upstream 1769944 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2275588 26353189 ~ 26375826 (+)
gng5 NA other downstream 106924 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 141226 28792847 ~ 28797159 (+)
G72873 NA other downstream 222735 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 530146 29181767 ~ 29196149 (+)
asip2b NA other downstream 968372 29619993 ~ 29623797 (+)

Expression


Co-expression Network