LOC117597043


Basic Information

Item Value
gene id LOC117597043
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28197991 ~ 28225603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86171
AATGTGTGTACTGCCTATATTTAAAGTACAAATAGagcatgtaatgtaatgtgttcgTCTCATACAAATGTAATATGCAGCATTGTATTCACCATTATAAAAGCACATAggtgtttattataattaatgttttattcctttaatctcCATGTCGTGACACAAATTGTCTCTGTTTTCAGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAACCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTTTAGTGAATGTCGCTTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCggagtaaatgttttttaagcaaaaaaaatctgctaaGAAGAAAAAGCCATTCAGCCTCACTGTGTGTTGGAGGTTTAACTCGTTTAATTCCTGACTTATTATTCAGCTGTTAGTGTTTAGTAACTACAGTGGAACTATAAAGAAGGATTTACATTtttgagagtgaggaatgtaaatcTGGAGCAcctaagataaaaaaaatttaaaaaataaataaataaatctatccTGTGTGAAGATGAACTGAAGATGGTGGATTATtacataaacaaagaaaaacagatctGAACCATTAAAATTTATGATAAATTGCTGCCTCGTCATTTCCTTTGTCAACACTG
>TU86175
AATGTGTGTACTGCCTATATTTAAAGTACAAATAGagcatgtaatgtaatgtgttcgTCTCATACAAATGTAATATGCAGCATTGTATTCACCATTATAAAAGCACATAggtgtttattataattaatgttttattcctttaatctcCATGTCGTGACACAAATTGTCTCTGTTTTCAGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAACCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTTTAGTGAATGTA
>XM_034303546.1
ATGTGTATTTGTGGTTAATCTGAAGGTTTTATGCTGTGatctgaggaagaagaggaaaagatgaAGATTATTATCCTGGCTTTTTCTATTTGGTCATGCCAGGCTGTGAGGGGTCAAACATCATGTACTGCACCATTTGTGCCAAATGGTAAACCTGAAAATGACCTAGCAGAATCCTATCCCACTGGAAGCTTTATTAGATATGTATGTGACAGCGGCTATGAGTTTGTAGAAACACATTATGCACTGTGTGAAGATGGAACTTGGAATCTGCCAGTTTGTAAACTTCTAACATCATGTACTGTGCCATTTGTGCAAAATGCTGAGCTCGCAGATGAGTTTACAGCAGCACTCTATCCTACTGGAAGCTTTGTAAGATTCATATGTGACAGAGGCTATGAGTATGAAGGAACAAAACATGCATGGTGTGTAGATGGAACTTGGACGCTaccagtgtgtaaatTTGTAACTCAAACAACATGTGCTGCCCCACGTGTGCCAAACGCCCAACCTGCAGATGTATTAGCAAAATCCTATTCTACTGGAGACATTGTTAGATTTGTATGTGACAGTGGCTACGAGTTTGAAGGAACAGATTCTGCACAGTGTGAAGATGGAGTTTGGAGGCTGCCAGTGTGTAAAGTTCTAGATAAACCAACGTGTCCTAAACCATGGGTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATAATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGGAACCTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTAATCGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACAGTGTGTAAATGGAACTTGGAGGCTGCCAGTGTATTCCCATAGACATCATGACAGCTCTGAGGACCATGGTGGATCTCTAGGTCCTGATACTGCGGTACTGTTGCCGGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAACCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTTTAGTGAATGTCGCTTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCggagtaaatgttttttaagcaaaaaaaatctgctaaGAAGAAAAAGCCATTCAGCCTCACTGTGTGTTGGAGGTTTAACTCGTTTAATTCCTGACTTATTATTCAGCTGTTAGTGTTTAGTAACTACAGTGGAACTATAAAGAAGGATTTACATTtttgagagtgaggaatgtaaatcTGGAGCAcctaagataaaaaaaatttaaaaaataaataaataaatctatccTGTGTGAAGATGAACTGAAGATGGTGGATTATtacataaacaaagaaaaacagatctGAACCATTAAAATTTATGATAAA

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU86171 False 916 lncRNA 0.34 4 28197991 28199809
TU86175 False 485 lncRNA 0.34 2 28199219 28199809
XM_034303546.1 True 1774 mRNA 0.40 11 28198023 28225603

Neighbor

gene id symbol gene type direction distance location
LOC113540124 NA coding downstream 1934 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 27010 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 57084 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 75888 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 104054 28075616 ~ 28093937 (-)
cdc73 cdc73 coding upstream 13293 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 51093 28276696 ~ 28286658 (-)
shha shh coding upstream 250828 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 349305 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 385588 28611191 ~ 28619112 (-)
G72658 pfn2,pfn2l non-coding downstream 53125 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 57553 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 128714 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 129907 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 185187 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 117531 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 140054 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 172058 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 441720 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 487431 28713034 ~ 28717955 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 156206 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 642004 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 714158 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 765313 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 801768 27396151 ~ 27396223 (-)
trnas-uga_1 NA other upstream 10583 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 11121 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 422721 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 562011 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 647975 28873578 ~ 28884965 (-)

Expression


Co-expression Network