G72726


Basic Information

Item Value
gene id G72726
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28397661 ~ 28471771 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86223
ttatttcaggTAGATTTATTCTGTTTGGATTTGTGTTTACATTTCGTTGACATTTACATGATGACAGAAAGAGGATGTGTACACACTGATGCGTCCATGACAGCAGTTTAGGAACACACAGTTCACTCCACACAGTAACGAGTGATCACATGACTTTTGGAGTGTACAGTAAATTGTCTGTTATACGGAGCGTTTCCCTTCGAGTCCACAACAACAacgcagaagtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtaacagacaGACAAATCGCTCGGAGCtctgaacgagtgtgtgaatgttcgCTTGGGTGCAGCGTCACTGATCCACGGTAAACAAACTAAGGAAATCCACGCGCCACGTCCTCcctgctttaatataaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86223 True 395 lncRNA 0.43 2 28397661 28471771

Neighbor

gene id symbol gene type direction distance location
ro60 trove2 coding downstream 111003 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 122346 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 201604 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 226680 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 256754 28124082 ~ 28140907 (-)
shha shh coding upstream 4660 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 103137 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 139420 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 148045 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 160983 28632754 ~ 28642395 (-)
G72709 NA non-coding downstream 14201 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 18529 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 252795 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 257223 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 328384 28068492 ~ 28069277 (-)
G72796 NA non-coding upstream 195552 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 241263 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 311152 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 360613 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 420245 28892016 ~ 28896799 (-)
trnas-uga_2 NA other downstream 160856 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 161394 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 172058 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 355876 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 841674 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 176553 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 315843 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 401807 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 676867 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 1092450 29564221 ~ 29575727 (-)

Expression


Co-expression Network