G72796


Basic Information

Item Value
gene id G72796
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28667323 ~ 28668643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86306
GCAAAattcaaaaatcaaaaaaactCTAGCTTTGAAACAGAAAAGTTTCAGAATTATGAAAGTAATCTTTACTCTTAATGCAAGAggcaaaaaaaatccttgaaGCTACTCTGGCCGGCGAAGTCCATCCCAGTTAGTTCGGTAAGCTTTTTTGCTGCTTGCATTAAGAATAAACTtaattactttcataattttgaaatttttcTGAAAGCTTGAGTTAAGAACTGCAGAATATTAGGCTTTAgctagagttttttttaatttgaattttgcTTTTGGACAAATTGGCAAATCCTAAAATGtggatatacactatatggccaaacgtttgctgacacctgaccataacattcatacagcatgtgcttgttgaacatcccattccagatttagtcccagtTTGCTGTTATCCTCAACTCCTCTGGGAAGCtctccactagattttggagcatggctgtggggatttgcccattgagccacaagagcattagtgaggtcaggtactgatgttgggtgaggagcctggggtgcagtcaccattccagttcattccaaaggtgtccAGTGGGGTGaagatcagggctctgtacaggccactcgagttcttccactccagccttggcaaaacatgtcttcatgtgataatgacgatgtgcacaggggcattgtcatgctggaacaggtctgtgctccttagttccagtgaagggaaattgtaatgttatagcCTACAATGacactctatacaattgtgtgcttccaaatttgtggcacctgtttgggaagaaccacatgtgggtgtgatggtcagatatccgcaaacttttggccatatagtgtatgatatTAGCAAAATTATCCTAAAATTTGTTTGTCTTCCATGTTTTACCATAAACCTTTTGGTTATTTGTGGCATTTTGGTTAGAAATTGTTTAGATGTTACAAATTTCATTTGGGCTTTTGTTAAAGAACCTTTTAATGATATGATGATAAccaatttaaattacaaataaggaattttaaataatgacatcattttaaatgacaCAAGAAGATTGAACCACTGTCTGTATGGCCGATGTATTCTTTTTAGTTTTCAAAAGATATTTTCAAAAgatgtaacaaaaaaagaaaagaagaaggtatGGCGCTACCTTTTGTTATGCTATAAGGGGCAATTTCCACTTAATCTCTGTCCCTTTAATTCAGACCCCAGTTGTGTATGGATTTAATATCTAGCTCTTATTTGGATGATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86306 True 1258 lncRNA 0.37 2 28667323 28668643

Neighbor

gene id symbol gene type direction distance location
dcaf8 dcaf8 coding downstream 24928 28632754 ~ 28642395 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding downstream 39180 28619816 ~ 28628143 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding downstream 48211 28611191 ~ 28619112 (-)
lmbr1 lmbr1 coding downstream 62080 28574908 ~ 28605243 (-)
shha shh coding downstream 175476 28476431 ~ 28491847 (-)
scp2a scp2,scp2a coding upstream 336 28668979 ~ 28680704 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 13829 28682472 ~ 28685576 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding upstream 17913 28686556 ~ 28690012 (-)
zte38 LOC108267617,LOC108430736 coding upstream 31026 28699669 ~ 28706523 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding upstream 39386 28708029 ~ 28711708 (-)
G72726 NA non-coding downstream 195552 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 283863 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 288191 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 522457 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 526885 28138866 ~ 28140438 (-)
LOC117597077 NA non-coding upstream 44391 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 114280 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 163741 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 223373 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 272019 28940662 ~ 29029191 (-)
LOC113540437 fam159a other downstream 14898 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 430518 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 431056 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 441720 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 625538 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 118971 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 204935 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 479995 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 895578 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1055945 29724588 ~ 29730857 (-)

Expression


Co-expression Network