LOC117597168


Basic Information

Item Value
gene id LOC117597168
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28787614 ~ 28791829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86322
TACGTTTGTGAGTACGTAGCCATAAAGCGAGACAACTTTGTTTCCTCGTTACCTCGAAAGCCTGTCGCTGGTCCTGTGCGTGGTTTCACATCAGCGGAGTTTTAAAACGCAGCTACGCCAAGATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACGCAGCGAGGCAACGTCAAATCAACGAAAAATAACACGGATGACAAAGTCTCAGTGGGACCATGGCTCCTGGCGCTCTTTATCTTTGTCGTGTGTGGGTCAGCCATATTCCAGATCATCCAGAGCATCCGAATGGGAATGTAACAGCAAGCACGGATGCACCGCACAGCGACCACTCGCCATTCCTACCTTCTACTTCCTGCTCCTTCGCAATAAAGGAATTTCTCTCAGCACCTTCGGTTTAATTTAAGCGATTTCTTCTGCCAGAGGTGCATCGGCATGCGATTCCTCTTCCTGTGCCTTATTACCACGAGGAAATTTCATCGAGCAATTAACTGCCGTCCGCTACGCTTCGTTCTTTCAATGCAAGCTATGATGTGACTCGTCTTAATTTCTTACATTCCTCCGGAGTATGTGGTAATTTTTATCTCTAAATGAAGGCGCTTGATGTATCCTgatatctttattttaatacCTAATTGACCAAATAGTGGGAAATTTGCACAAGGTGAAGGAGATAAAAGCCGGGAACCAATGGAAGCATGGAAACCAATCAAAAGATGGAAAGCTAAACCCTCTTCTTTTGACCACTAATgtaattttctttcattcctttatGATTTTGTGATTCTAACAGTATTTCCGATGGCTgcctctgtgtgtttcagttctGATTAGCGCCAGAGTTTAGGGCTACGTATGGGCTTCGTCTCATTTACAGTTCTCAGGCACATACTGCTCTTTGGCATACCccatagtgacctagaaattgtgcTTATTGTCTCAGACTTAATGGAAGCTTTGAATAGATCATGGGgtgaaactgaaataaaatgtcatt
>XM_034303991.1
TACGTTTGTGAGTACGTAGCCATAAAGCGAGACAACTTTGTTTCCTCGTTACCTCGAAAGCCTGTCGCTGGTCCTGTGCGTGGTTTCACATCAGCGGAGTTTTAAAACGCAGCTACGCCAAGATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACGCAGCGAGGCAACGTCAAATCAACGAAAAATAACACGGATGACAAAGTCTCAGTGGGACCATGGCTCCTGGCGCTCTTTATCTTTGTCGTGTGTGGGTCAGCCATATTCCAGATCATCCAGAGCATCCGAATGGGAATGTAACAGCAAGCACGGATGCACCGCACAGCGACCACTCGCCATTCCTACCTTCTACTTCCTGCTCCTTCGCAATAAAGGAATTTCTCTCAGCACCTTCGGTTTAATTTAAGCGATTTCTTCTGCCAGAGGTGCATCGGCATGCGATTCCTCTTCCTGTGCCTTATTACCACGAGGAAATTTCATCGAGCAATTAACTGCCGTCCGCTACGCTTCGTTCTTTCAATGCAAGCTATGATGTGACTCGTCTTAATTTCTTACATTCCTCCGGAGTATGTGGTAATTTTTATCTCTAAATGAAGGCGCTTGATGTATCCTgatatctttattttaatacCTAATTGACCAAATAGTGGGAAATTTGCACAAGGTGAAGGAGATAAAAGCCGGGAACCAATGGAAGCATGGAAACCAATCAAAAGATGGAAAGCTAAACCCTCTTCTTTTGACCACTAATgtaattttctttcattcctttatGATTTTGTGATTCTAACAGTATTTCCGATGGCTgcctctgtgtgtttcagttctGATTAGCGCCAGAGTTTAGGGCTACGTATGGGCTTCGTCTCATTTACAGTTCTCAGGCACATACTGCTCTTTGGCATACCccatagtgacctagaaattgtgcTTATTGTCTCAGACTTAATGGAAGCTTTGAATAGATCATGGGgtgaaactgaaataaaatgtcattgaGAGCATG

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86322 False 1017 lncRNA 0.44 3 28787623 28791829
XM_034303991.1 True 1026 mRNA 0.44 3 28787614 28791829

Neighbor

gene id symbol gene type direction distance location
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 1859 28763304 ~ 28785755 (-)
arl14 LOC108267661 coding downstream 24337 28762094 ~ 28763277 (-)
LOC113540626 rec8 coding downstream 30970 28745630 ~ 28756644 (-)
si:ch73-182a11.2 LOC108268045 coding downstream 50861 28722850 ~ 28736753 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding downstream 75906 28708029 ~ 28711708 (-)
LOC113540190 NA coding upstream 7148 28798977 ~ 28827964 (-)
gipc2 gipc2,LOC108430720 coding upstream 51093 28842922 ~ 28861443 (-)
LOC117597036 NA coding upstream 85744 28877573 ~ 28880202 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding upstream 119784 28911613 ~ 28918152 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 263183 29055012 ~ 29077436 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 3474 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 69659 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 118971 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 315843 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 404154 28343134 ~ 28383460 (-)
G72893 NA non-coding upstream 40555 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 100187 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 148833 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 194643 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 251931 29043760 ~ 29043970 (-)
LOC113540437 fam159a other downstream 135189 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 550809 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 551347 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 562011 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 745829 28016064 ~ 28041785 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 81749 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 356809 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 772392 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 932759 29724588 ~ 29730857 (-)
G73619 blvra other upstream 1227677 30019506 ~ 30022525 (-)

Expression


Co-expression Network