G72824 (otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147)


Basic Information

Item Value
gene id G72824
gene name otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28782923 ~ 28784140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86345
TGAGGCTCAAGTTCGATTAAAAGGATTCGCCCATTCAACTGCAAATATCCAGGAAAAGTTGGTTAGCAAATTTGTAACAAGATGGCCTTCAAGTATCAAACACAAAATCATCATAATTCTTGCTTCTCTGTTTTATGAAAATTTGCCtttaataataactaaagtGAAATAGTGTTTATTTACCACCAAAAAGTATACTTGATCCCAAGCAATTACCTTTGACAAGTTTCTCAAGCACACCCCAAATTTTGGCATgaaacacagactcacacatTATTTCAGAAAACAATTAAATGACATGCTTATCATCTAAttaattccttcattcatcttcagttccTACTTTATTCCAATCAGGGTCAGGGTGGCTCCAGGGGGAAGAAATCaagcaatgtttaaaaaaacttagTAAAGCTTTTGCGTTTCAATTTGACCCACTTTACACATGGCACTACTAAAAAGTAATGCACACATTGCATTCCACATTTTTCCCCACCAtaatgattgcatttcagtATGGCATGAATTCCATTCCATATGCTACATATCCcctataaaatgaaaattctgtttaGTACACAAATTAGTCAGTGTCTGGAAAACCATCCCTGAAGGTGCACTCTGATATGAATTTCAGAAGATATGGCCCAAAGCAGAGTTATTAGTAGCTGGTCAGTTGCTGTTAGTAAGCGTATGAGGCATCAGTATGAGGCTTGGGTAAAATAAGTGGCTTCTGATGCAACAGGCACTGGTCATGTGTAGTAAAGCAAAAGGTCCATTCTCAGGTGTTCTCAGTCGTCATTCCTTAGTGGCATCAGCGAAGAGTAGGAAGCCAGAAAAGGTACTGTCGTCTTCACTGCTGGAATAAATTCCATTCCAGTCCCGCAGTGTCTCCAGCCATACCTGGTCACCAGAGGACAGTCGGATCAGTGCCATGTTGGAGGCCTGGTCGATGTCCTGGCCATAGAGGGAGTCGCGAGTGCGCAGTTTCCGAACCCCATTCACTACCAAGGCGGCCCGCAAAGGACGACTGCGAACGGTGATGTAGTAGGAAAACACATAGACACCTCCGTAAGTGCAGTTGAACTTGCTGATATAGGGGTCCCAGTGTCCTTCCTCGTTGTAGATGACTTTGTCAAATTTGACCGGGTGGCCAGGAGGAGGGAAAGATCTGCTAGGGAAGAGTCCTACGCTAAAGGCTGAGCGCTTCTGAATGAA

Function

symbol description
otol1a Enables calcium ion binding activity. Involved in otolith mineralization. Acts upstream of or within otolith development. Predicted to be located in extracellular region. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in otic vesicle. Orthologous to human OTOL1 (otolin 1).

NR:

description
PREDICTED: otolin-1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86345 True 1218 lncRNA 0.42 1 28782923 28784140

Neighbor

gene id symbol gene type direction distance location
arl14 LOC108267661 coding downstream 19646 28762094 ~ 28763277 (-)
LOC113540626 rec8 coding downstream 26279 28745630 ~ 28756644 (-)
si:ch73-182a11.2 LOC108268045 coding downstream 46170 28722850 ~ 28736753 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding downstream 71215 28708029 ~ 28711708 (-)
zte38 LOC108267617,LOC108430736 coding downstream 76400 28699669 ~ 28706523 (-)
LOC113540190 NA coding upstream 14837 28798977 ~ 28827964 (-)
gipc2 gipc2,LOC108430720 coding upstream 58782 28842922 ~ 28861443 (-)
LOC117597036 NA coding upstream 93433 28877573 ~ 28880202 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding upstream 127473 28911613 ~ 28918152 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 270872 29055012 ~ 29077436 (-)
LOC117597077 NA non-coding downstream 64968 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 114280 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 311152 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 399463 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 403791 28365657 ~ 28379132 (-)
G72893 NA non-coding upstream 48244 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 107876 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 156522 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 202332 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 259620 29043760 ~ 29043970 (-)
LOC113540437 fam159a other downstream 130498 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 546118 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 546656 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 557320 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 741138 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 3474 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 89438 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 364498 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 780081 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 940448 29724588 ~ 29730857 (-)

Expression


Co-expression Network