selenot1a (selenot,selt1a,LOC107681817,LOC107708642)


Basic Information

Item Value
gene id selenot1a
gene name selenot,selt1a,LOC107681817,LOC107708642
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28792847 ~ 28797159 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86346
ATTAGCTGCCGCGGCTCGGAGAAGCGAAGATGCGCTGGTTTCCGCTCTCCGTGTTAATATTAATGGCCTGCTCGCTTTATCGCGCCGGTGGCCATAACAACGGAGTCAGGAAAACGAAAATGCAGTTTGCAGCCGGTCCTCTTCTTAAATTTCAAATCTGTATCTCCTGAGGCTACAAGCGGGTGTTTGAGGAGTACACGCAGGTCTTGTCCCAGCGGTACCCAGACATCCGCATTGAGGGGGAGAACTATCTCCCGCTGCCTATTTACAGGCACATTGCTTCCTTTCTATCCATTTTCAAACTGTTCCTGATCGGGCTGATCGTCGTAGGCAAGGACCCGTTCACGTTTTTCGGCATGGAGCCGCCAAGACTTTGGACTTGGAGTCAAGAGAATAAGATCTATGCCTGCATGATGGTGTTCTTCTTCAGCAATATGCTCGAAAATCAGTGCATGTCGACCGGGGCTTTTGAAATCACATTCAACGATGTTCCCGTGTGGTCCAAGCTGGAGTCAGGACACCTTCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAACGAGATGAAGATGAACATGCCCATGGACAGACTTCCACAATATCACTCTTAACCCAGAGATCCAGTTCCTTCcaaGTGTACGGTGCGACTCTCCCGCGGTCGTGAGGCGACGTTTTATGAAGGTCTGCGCTGAAAGTAGTCCTGCTACTGGCGCAGGCTGGATACCCCGCCCACTGCTCGCCGCCACGCCCCTCCGGAGAGGCTCCGCCCCCACATCCTAGTCCACACACAAACCCTCCGTGGCAATTTATTACTACTGACTCCCACATGCAGTGCAATAACAGTTGACTTCAGGATTTATGCATAAGCAGTATGTTTTAATAAGAGACAATGTGCTCAAATGTGCATTTATGTAGTTCCCTTATCTTCCTGTAAACTTTATAACAACCtatgattaaataatataatgtttaaaaaaattctaacttTCTTAACTTGCCCAAATCATGGTTATTTAACATTGTCAATTGTTTTACTgatc
>XM_026936511.2
TGCCGCGGCTCGGAGAAGCGAAGATGCGCTGGTTTCCGCTCTCCGTGTTAATATTAATGGCCTGCTCGCTTTATCGCGCCGGTGGCCATAACAACGGAGTCAGGAAAACGAAAATGCAGTTTGCAGCCGGTCCTCTTCTTAAATTTCAAATCTGTATCTCCTGAGGCTACAAGCGGGTGTTTGAGGAGTACACGCAGGTCTTGTCCCAGCGGTACCCAGACATCCGCATTGAGGGGGAGAACTATCTCCCGCTGCCTATTTACAGGCACATTGCTTCCTTTCTATCCATTTTCAAACTGTTCCTGATCGGGCTGATCGTCGTAGGCAAGGACCCGTTCACGTTTTTCGGCATGGAGCCGCCAAGACTTTGGACTTGGAGTCAAGAGAATAAGATCTATGCCTGCATGATGGTGTTCTTCTTCAGCAATATGCTCGAAAATCAGTGCATGTCGACCGGGGCTTTTGAAATCACATTCAACGATGTTCCCGTGTGGTCCAAGCTGGAGTCAGGACACCTTCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAACGAGATGAAGATGAACATGCCCATGGACAGACTTCCACAATATCACTCTTAACCCAGAGATCCAGTTCCTTCcaaGTGTACGGTGCGACTCTCCCGCGGTCGTGAGGCGACGTTTTATGAAGGTCTGCGCTGAAAGTAGTCCTGCTACTGGCGCAGGCTGGATACCCCGCCCACTGCTCGCCGCCACGCCCCTCCGGAGAGGCTCCGCCCCCACATCCTAGTCCACACACAAACCCTCCGTGGCAATTTATTACTACTGACTCCCACATGCAGTGCAATAACAGTTGACTTCAGGATTTATGCATAAGCAGTATGTTTTAATAAGAGACAATGTGCTCAAATGTGCATTTATGTAGTTCCCTTATCTTCCTGTAAACTTTATAACAACCtatgattaaataatataatgtttaaaaaaattctaacttTCTTAACTTGCCCAAATCATGGTTATTTAACATTGTCAATTGTTTTACTgatctgttaatttttttttatatata

Function

symbol description
selenot Predicted to enable thioredoxin-disulfide reductase activity. Involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: selenoprotein T

GO: NA

KEGG:

id description
K22366 SELENOT; thioredoxin reductase-like selenoprotein T

RNA

RNA id representative length rna type GC content exon number start site end site
TU86346 False 1040 lncRNA 0.48 6 28792847 28797137
XM_026936511.2 True 1056 mRNA 0.47 6 28792853 28797159

Neighbor

gene id symbol gene type direction distance location
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding upstream 8740 28779749 ~ 28784107 (+)
si:ch73-344o19.1 NA coding upstream 47201 28739126 ~ 28745646 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding upstream 69990 28716264 ~ 28722857 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding upstream 93431 28691096 ~ 28699416 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding upstream 126216 28654756 ~ 28666631 (+)
zgc:153615 zgc:153615,LOC108267208,LOC108430722,LOC103026425,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC105899149 coding downstream 16924 28814083 ~ 28823502 (+)
LOC113540201 LOC108267859 coding downstream 30793 28827952 ~ 28831728 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding downstream 35214 28832373 ~ 28842762 (+)
LOC117597034 NA coding downstream 65898 28863057 ~ 28868178 (+)
LOC117597120 NA coding downstream 87992 28885151 ~ 28887556 (+)
G72472 NA non-coding upstream 1011 28787617 ~ 28791836 (+)
G72428 NA non-coding upstream 134311 28658276 ~ 28658536 (+)
G72422 NA non-coding upstream 141226 28651414 ~ 28651621 (+)
G72404 NA non-coding upstream 155646 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding upstream 164874 28623240 ~ 28627973 (+)
G72869 NA non-coding downstream 65257 28862416 ~ 28901261 (+)
G72872 NA non-coding downstream 76444 28873603 ~ 28873988 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding downstream 117470 28914629 ~ 28915258 (+)
G72892 NA non-coding downstream 120583 28917742 ~ 28918398 (+)
G72910 NA non-coding downstream 133917 28931076 ~ 28931398 (+)
gng5 NA other upstream 31396 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 409425 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 454674 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1386449 27384807 ~ 27406398 (+)
gng7 NA other upstream 1911377 26872676 ~ 26881470 (+)
G72873 NA other downstream 77197 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 384608 29181767 ~ 29196149 (+)
asip2b NA other downstream 822834 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 876355 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1657598 30454757 ~ 30478293 (+)

Expression


Co-expression Network