G72869


Basic Information

Item Value
gene id G72869
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28862416 ~ 28901261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86397
ccCAGTTTTTATAtctaaaaatgataataatgaaataatattaaaatgctaatcATGCTAAGTTGCTACGTTGTTAAATCAGGTCAGTGTGAGAGACAAAATGGCGGACACGCACAAATTCTGTTCTATTTACACAATatcacaaaaacactgaaataatatTTACGCGCTAATTATTTGATTTTGCTCCCGTTTTATTGgagtttattgtattttaagatTAGAAAGCTAATATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86397 True 239 lncRNA 0.29 2 28862416 28901261

Neighbor

gene id symbol gene type direction distance location
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding upstream 19654 28832373 ~ 28842762 (+)
LOC113540201 LOC108267859 coding upstream 30688 28827952 ~ 28831728 (+)
zgc:153615 zgc:153615,LOC108267208,LOC108430722,LOC103026425,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC105899149 coding upstream 38914 28814083 ~ 28823502 (+)
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding upstream 78309 28779749 ~ 28784107 (+)
si:ch73-344o19.1 NA coding upstream 116770 28739126 ~ 28745646 (+)
LOC117597035 NA coding downstream 269 28901530 ~ 28906396 (+)
cope cope,LOC107709006,LOC107681743 coding downstream 22350 28923611 ~ 28930532 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding downstream 39413 28940674 ~ 29042995 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding downstream 178923 29080184 ~ 29128564 (+)
miga1 miga1 coding downstream 271495 29172756 ~ 29184256 (+)
G72472 NA non-coding upstream 70580 28787617 ~ 28791836 (+)
G72428 NA non-coding upstream 203880 28658276 ~ 28658536 (+)
G72422 NA non-coding upstream 210795 28651414 ~ 28651621 (+)
G72404 NA non-coding upstream 225215 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding upstream 234443 28623240 ~ 28627973 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding downstream 13368 28914629 ~ 28915258 (+)
G72892 NA non-coding downstream 16481 28917742 ~ 28918398 (+)
G72910 NA non-coding downstream 29815 28931076 ~ 28931398 (+)
G72913 NA non-coding downstream 32722 28933983 ~ 28934309 (+)
G72917 NA non-coding downstream 152225 29053486 ~ 29054218 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 65257 28792847 ~ 28797159 (+)
gng5 NA other upstream 100965 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 478994 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 524243 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1456018 27384807 ~ 27406398 (+)
fubp1 fubp1 other downstream 280506 29181767 ~ 29196149 (+)
asip2b NA other downstream 718732 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 772253 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1553496 30454757 ~ 30478293 (+)
G73944 NA other downstream 1844870 30746131 ~ 30767132 (+)

Expression


Co-expression Network