G72889 (dnajb4,LOC107708915,LOC107566472,LOC107690981)


Basic Information

Item Value
gene id G72889
gene name dnajb4,LOC107708915,LOC107566472,LOC107690981
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28914629 ~ 28915258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86423
CAGACTGATGCGGACGGGGTAGACGATGTCGGACCCTTCTCTCCTGAAGTGCGGGTGCGGCTTGTCCTTGATGACGAAGACGATGTCGGCAGGGATGCAGCCGGGGGACTCGTCGCCCTCCCGTGGGAACGTGATCTTGGTGCCCTCCTTCCAGCCGCGCTTGATCTCGATGGACAGGATCTTGTCCTCAGTGCGTGTGGTGCGGCCGTCAGCATTCAGGCGACGGCGTGAGATCTTCATGCGCTTGGTACAGCCGTGAAAGACCTCCTCGAGCGAGACACGCAGTTCGTGATGGATCGCCGGGTCCTGCTTACGCCGAGGCTGCCGGTCACGAGGGAAACCGTTCAGATTAAAACTCGTGAAGGAGCCAAAAGGGTCACCGGTGTCCACTTCCATGTCCTCATCGTCTCTGCCGTTCACCTGAAATCAGaataatacaaattatatatCGAAGTTTTGTACAGTTTATACACTAG
>TU86425
TAAACAGATATGCAAACATGCGTTAACAAAACCCAAACATCTGTAAGCATCTGTATTCTGTAGCTAAAAGCTGAAACAGCtgtattaagtgtttaatgGTTTACAGCAGCTGAAGACAGACTGGGGCATTTGGGCCCGGGATGCCCACCTGGCGCAGACTGATGCGGACGGGGTAGACGATGTCGGACCCTTCTCTCCTGAAGTGCGGGTGCGGCTTGTCCTTGATGACGAAGACGATGTCGGCAGGGATGCAGCCGGGGGACTCGTCGCCCTCCCGTGGGAACGTGATCTTGGTGCCCTCCTTCCAGCCGCGCTTGATCTCGATGGACAGGATCTTGTCCTCAGTGCGTGTGGTGCGGCCGTCAGCATTCAGGCGACGGCGTGAGATCTTCATGCGCTTGGTACAGCCGTGAAAGACCTCCTCGAGCGAGACACGCAGTTCGTGATGGATCGCCGGGTCCTGCTTACGCCGAGGCTGCCGGTCACGAGGGAAACCGTTCAGATTAAAACTCGTGAAGGAGCCAAAAGGGTCACCGGTGTCCACTTCCATGTCCTCATCGT

Function

symbol description
dnajb4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4).

NR:

description
PREDICTED: dnaJ homolog subfamily B member 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86423 False 476 lncRNA 0.56 1 28914783 28915258
TU86425 True 561 lncRNA 0.56 1 28914629 28915189

Neighbor

gene id symbol gene type direction distance location
LOC117597035 NA coding upstream 8233 28901530 ~ 28906396 (+)
LOC117597120 NA coding upstream 27073 28885151 ~ 28887556 (+)
LOC117597034 NA coding upstream 46451 28863057 ~ 28868178 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding upstream 71867 28832373 ~ 28842762 (+)
LOC113540201 LOC108267859 coding upstream 82901 28827952 ~ 28831728 (+)
cope cope,LOC107709006,LOC107681743 coding downstream 8353 28923611 ~ 28930532 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding downstream 25416 28940674 ~ 29042995 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding downstream 164926 29080184 ~ 29128564 (+)
miga1 miga1 coding downstream 257498 29172756 ~ 29184256 (+)
LOC113540202 LOC108267626,LOC108437507 coding downstream 281331 29196589 ~ 29205743 (+)
G72869 NA non-coding upstream 13368 28862416 ~ 28901261 (+)
G72872 NA non-coding upstream 40641 28873603 ~ 28873988 (+)
G72472 NA non-coding upstream 122793 28787617 ~ 28791836 (+)
G72428 NA non-coding upstream 256093 28658276 ~ 28658536 (+)
G72422 NA non-coding upstream 263008 28651414 ~ 28651621 (+)
G72892 NA non-coding downstream 2484 28917742 ~ 28918398 (+)
G72910 NA non-coding downstream 15818 28931076 ~ 28931398 (+)
G72913 NA non-coding downstream 18725 28933983 ~ 28934309 (+)
G72917 NA non-coding downstream 138228 29053486 ~ 29054218 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding downstream 383877 29299135 ~ 29301133 (+)
G72873 NA other upstream 2525 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 117470 28792847 ~ 28797159 (+)
gng5 NA other upstream 153178 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 531207 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 576456 28316404 ~ 28338173 (+)
fubp1 fubp1 other downstream 266509 29181767 ~ 29196149 (+)
asip2b NA other downstream 704735 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 758256 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1539499 30454757 ~ 30478293 (+)
G73944 NA other downstream 1830873 30746131 ~ 30767132 (+)

Expression


Co-expression Network