G72893


Basic Information

Item Value
gene id G72893
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28832384 ~ 28833720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86430
ggccaatcaacgtctacttacgccacggatagtaccagttgtgctggatagaccctgctccggagtaggagctaatctggttctcgaaaaaggcagtcggtactaaaatcacacccagttccggaggtgcaaaaacaccaaaaagtgggtagttccacaattagttcaggtactatgaaaaggttcccgtgGTGTGAAAGGCCCTATAAACTCCATCTGACACGCACCTCGCTTCTGCCTCTTTCTTCCCATCTTCCAGGCTTCTCCAGTGGATGTGGTCCCCAAACCTCTTCCATTCCCCTCCGCGGAAACTCCTCCGAAATGCGAAGCGAACAAACATAAAAGCAAAGAGACATTAATTAAAAacgactgcattttttttattattattattattcacgcGTTAGCATTCAATGCTAGCTCTCACTAGCTCCAAGGCTTCGACAGTGGAGGATTTTCAGGGCTGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86430 True 470 lncRNA 0.47 2 28832384 28833720

Neighbor

gene id symbol gene type direction distance location
LOC113540190 NA coding downstream 4420 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 46629 28763304 ~ 28785755 (-)
arl14 LOC108267661 coding downstream 69107 28762094 ~ 28763277 (-)
LOC113540626 rec8 coding downstream 75740 28745630 ~ 28756644 (-)
si:ch73-182a11.2 LOC108268045 coding downstream 95631 28722850 ~ 28736753 (-)
gipc2 gipc2,LOC108430720 coding upstream 9202 28842922 ~ 28861443 (-)
LOC117597036 NA coding upstream 43853 28877573 ~ 28880202 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding upstream 77893 28911613 ~ 28918152 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 221292 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 297466 29131186 ~ 29147492 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 48244 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 114429 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 163741 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 360613 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 448924 28343134 ~ 28383460 (-)
LOC117597038 NA non-coding upstream 58296 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 106942 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 152752 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 210040 29043760 ~ 29043970 (-)
G73248 NA non-coding upstream 219877 29053597 ~ 29054227 (-)
LOC117597168 NA other downstream 40555 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 179959 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 595579 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 596117 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 606781 28197991 ~ 28225603 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 39858 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 314918 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 730501 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 890868 29724588 ~ 29730857 (-)
G73619 blvra other upstream 1185786 30019506 ~ 30022525 (-)

Expression


Co-expression Network