XLOC_005297 (atpaf2)


Basic Information

Item Value
gene id XLOC_005297
gene name atpaf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18410608 ~ 18414539 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010170
ATTATCCTCTATGGTTTTTCCTGTTTAGGTCATCGTCAGTCCACTTTACGGCACGCTGTTTTCATTTTGCTGCATGCCTTTAAATACCTTCTAGTGTATTTGCTTGAATAATTGAGTTTATCTCAGATATACTCATTTCTTGTAATTTATACgattaaaacatgaaaaatgcTTTGTCAAATTTGATATAACACCAGATCCGGCTTTTTAACCTTGACTGAATGGCTTATCACGCCTAAACTGTGGCgtcaatacaaatacaaatttacacaCATAACGTTTAAAACATGCTACGAAATATATGTCGGTATCACACAAAGTTTGGCCAGGCAATTATTTGGCCGTTTTCATTTTCTTACGTGAAGCATGTTCCCAGTTTATCAACACAGCTACAAAAGGCTAAATATAGCAGTGCTACAGCAGAGAGGAAAAAGTTCTACGAGACTGTATCTATAACTCAAGGTGAAGGTGGCTTGTTTGAAATAAACCTTGATAAGAGAAAGCTGAAGACCCCAAGTGGAAAACTATTCACAGTTCCCAATGAAGCTCTTGCCATTGCTGTTGCAAATGAGTGGGACGTTCAAAAGGACACATTGAAGTTTTACACTATGCACTTGACCACCCTTTGTAACACTGCTCTTGATAATCCAACACAAAGGACAAAAGAACAGATGATCTCTGCCGCTCTGAAGTTTTTGGAAACAGACACTATCTGTTACAGAGTAGAAGAACCTCCAGGCCTTGTGGAACTTCAGACAAATGAATGGGACCCTGTGATGAACTGGATTGAACAAAGGTACAATGTAGTCATTGGCTCGTCCTCCAATATAATGGGCCCTCAAATCCCAGAAGAGACTAAAGAGACATTTCATCAGCACCTTAATTCCTTCAACTTCTGGTCTCTGACAGGGCTTGAGTTTGTGATCAATCAGCTGAAGTCGCTGGTTTTGTCCTTTGCGCTGATTGACAGACACCTAAATGTGGAAGAAGCGGTTCTGTTGTCCAGACTTGAGGAAGAATACCAGATTCGGAGCTGGGGAAATGTGGAGTGGGTCCATGATTATGACATGTATGAGCTGAGAGCGCGAACGGCGGCTGGTGCATTGTTTGTGCATCTGTCATCTGAAAAAACatctgtgaagaaaaaaatcttacaaGACTGATAATGCCAAAAATAGACTGTGTGGGTCTGAAACTTTGGGAATtgttatctgtttttgtttttacagtgacaCTAGTTATCTAACCAGTAGttatgttttgagaaataatacaGATTTCTAAGGTCATGATATGTATTTATAGTGTCAACAGCTATCACATGGAAACACTGTAAATGCTAAAACCCAGTATTTCAAACTCAATTTCAAAGAtgtaaatgtttaaactgtatgttggggaaaagaaagaaacattttaataaattacaaagtACAAACATCTAA
>TCONS_00010171
CAATTGTACCTCGCTTTGCAGTTACAGAGTAGAAGAACCTCCAGGCCTTGTGGAACTTCAGACAAATGAATGGGACCCTGTGATGAACTGGATTGAACAAAGGTACAATGTAGTCATTGGCTCGTCCTCCAATATAATGGGCCCTCAAATCCCAGAAGAGACTAAAGAGACATTTCATCAGCACCTTAATTCCTTCAACTTCTGGTCTCTGACAGGGCTTGAGTTTGTGATCAATCAGCTGAAGTCGCTGGTTTTGTCCTTTGCGCTGATTGACAGACACCTAAATGTGGAAGAAGCGGTTCTGTTGTCCAGACTTGAGGAAGAATACCAGATTCGGAGCTGGGGAAATGTGGAGTGGGTCCATGATTATGACATGTATGAGCTGAGAGCGCGAACGGCGGCTGGTGCATTGTTTGTGCATCTGTCATCTGAAAAAACatctgtgaagaaaaaaatcttacaaGACTGATAATGCCAAAAATAGACTGTGTGGGTCTGAAACTTTGGGAATtgttatctgtttttgtttttacagtgacaCTAGTTATCTAACCAGTAGttatgttttgagaaataatacaGATTTCTAAGGTCATGATATGTATTTATAGTGTCAACAGCTATCACATGGAAACACTGTAAATGCTAAAACCCAGTATTTCAAACTCAATTTCAAAGAtgtaaatgtttaaactgtatgttggggaaaagaaagaaacattttaataaattacaaagtACAAACATC
>TCONS_00011118
AAAGGACAAAAGAACAGATGATCTCTGCCGCTCTGAAGTTTTTGGAAACAGACACTATCTGTTACAGAGTAGAAGAACCTCCAGGCCTTGTGGAACTTCAGACAAATGAATGGGACCCTGTGATGAACTGGATTGAACAAAGGTACAATGTAGTCATTGGCTCGTCCTCCAATATAATGGGCCCTCAAATCCCAGAAGAGACTAAAGAGACATTTCATCAGCACCTTAATTCCTTCAACTTCTGGTCTCTGACAGGGCTTGAGTTTGTGATCAATCAGCTGAAGTCGCTGGTTTTGTCCTTTGCGCTGATTGACAGACACCTAAATGTGGAAGAAGCGGTTCTGTTGTCCAGACTTGAGGAAGAATACCAGATTCGGAGCTGGGGAAATGTGGAGTGGGTCCATGATTATGACATGTATGAGCTGAGAGCGCGAACGGCGGCTGGTGCATTGTTTGTGCATCTGTCATCTGAAAAAACatctgtgaagaaaaaaatcttacaaGACTGATAATGCCAAAAATAGACTGTGTGGGTCTGAAACTTTGGGAATtgttatctgtttttgtttttacagtgacaCTAGTTATCTAACCAGTAGttatgttttgagaaataatacaGATTTCTAAGGTCATGATATGTATTTATAGTGTCAACAGCTATCACATGGAAACACTGTAAATGCTAAAACCCAGTATTTCAAACTCAATTTCAAAGAtgtaaatgtttaaactgtatgttggggaaaagaaagaaacattttaataaattacaaagtACAAACATC
>TCONS_00010172
AAAGGACAAAAGAACAGATGATCTCTGCCGCTCTGAAGTTTTTGGAAACAGACACTATCTGTTACAGAGTAGAAGAACCTCCAGGCCTTGTGGAACTTCAGACAAATGAATGGGACCCTGTGATGAACTGGATTGAACAAAGGTAAAATTGACAGATTTTTGGTCAGAGTTTTGATTGTGTACTAATTACAAAAAGTTACAATTTACTGGTATATAAGAACGTACTGTTGTTTTTAGGTACAATGTAGTCATTGGCTCGTCCTCCAATATAATGGGCCCTCAAATCCCAGAAGAGACTAAAGAGACATTTCATCAGCACCTTAATTCCTTCAACTTCTGGTCTCTGACAGGGCTTGAGTTTGTGATCAATCAGCTGAAGTCGCTGGTTTTGTCCTTTGCGCTGATTGACAGACACCTAAATGTGGAAGAAGCGGTTCTGTTGTCCAGACTTGAGGAAGAATACCAGATTCGGAGCTGGGGAAATGTGGAGTGGGTCCATGATTATGACATGTATGAGCTGAGAGCGCGAACGGCGGCTGGTGCATTGTTTGTGCATCTGTCATCTGAAAAAACatctgtgaagaaaaaaatcttacaaGACTGATAATGCCAAAAATAGACTGTGTGGGTCTGAAACTTTGGGAATtgttatctgtttttgtttttacagtgacaCTAGTTATCTAACCAGTAGttatgttttgagaaataatacaGATTTCTAAGGTCATGATATGTATTTATAGTGTCAACAGCTATCACATGGAAACACTGTAAATGCTAAAACCCAGTATTTCAAACTCAATTTCAAAGAtgtaaatgtttaaactgtatgttggggaaaagaaagaaacattttaataaattacaaagtACAAACATC
>TCONS_00010173
ATCCTCTATGGTTTTTCCTGTTTAGGTCATCGTCAGTCCACTTTACGGCACGCTGTTTTCATTTTGCTGCATGCCTTTAAATACCTTCTAGTGTATTTGCTTGAATAATTGAGTTTATCTCAGATATACTCATTTCTTGTAATTTATACgattaaaacatgaaaaatgcTTTGTCAAATTTGATATAACACCAGATCCGGCTTTTTAACCTTGACTGAATGGCTTATCACGCCTAAACTGTGGCgtcaatacaaatacaaatttacacaCATAACGTTTAAAACATGCTACGAAATATATGTCGGTATCACACAAAGTTTGGCCAGGCAATTATTTGGCCGTTTTCATTTTCTTACGTGAAGCATGTTCCCAGTTTATCAACACAGCTACAAAAGGCTAAATATAGCAGTGCTACAGCAGAGAGGAAAAAGTTCTACGAGACTGTATCTATAACTCAAGGTGGCTTGTTTGAAATAAACCTTGATAAGAGAAAGCTGAAGACCCCAAGTGGAAAACTATTCACAGTTCCCAATGAAGCTCTTGCCATTGCTGTTGCAAATGAGTGGGACGTTCAAAAGGACACATTGAAGTTTTACACTATGCACTTGACCACCCTTTGTAACACTGCTCTTGATAATCCAACACAAAGGACAAAAGAACAGATGATCTCTGCCGCTCTGAAGTTTTTGGAAACAGACACTATCTGTTACAGAGTAGAAGAACCTC
>TCONS_00010174
TTTAGGTCATCGTCAGTCCACTTTACGGCACGCTGTTTTCATTTTGCTGCATGCCTTTAAATACCTTCTAGTGTATTTGCTTGAATAATTGAGTTTATCTCAGATATACTCATTTCTTGTAATTTATACgattaaaacatgaaaaatgcTTTGTCAAATTTGATATAACACCAGATCCGGCTTTTTAACCTTGACTGAATGGCTTATCACGCCTAAACTGTGGCgtcaatacaaatacaaatttacacaCATAACGTTTAAAACATGCTACGAAATATATGTCGGTATCACACAAAGTTTGGCCAGGCAATTATTTGGCCGTTTTCATTTTCTTACGTGAAGCATGTTCCCAGTTTATCAACACAGCTACAAAAGGCTAAATATAGCAGTGCTACAGCAGAGAGGAAAAAGTTCTACGAGACTGTATCTATAACTCAAGGTGAAGGTGAGCATCATTCAGTACTGATGGCCATAGCAGCACCTTAAAAGAAACATGTTTTCAATGAAGAAGATCGAGGGTTTGCTCATATGAAAACACAGATTTTCTTGTTTATAGGTGGCTTGTTTGAAATAAACCTTGATAAGAGAAAGCTGAAGACCCCAAGTGGAAAACTATTCACAGTTCCCAATGAAGCTCTTGCCATTGCTGTTGCAAATGAGTGGGACGTTCAAAAGGACACATTGAAGTTTTACACTATGCACTTGGtaggatattattattaatttatattatattattattattatactatattttgGTTTCCCAAGTACTACTAGTATATTTGAAAGTTGTATTCTACAACTGTCTACAGAGTACATTCAAATGTATCTATAATACATACATAGTAGCATGGAACACATATTTTTATACACTCTTCAGAACTGAAACTTACAGTATTACAAGTCTACAAGAGTagtacctttattattattacccaAAATCTGTacttttttaggtgttttttctttttaattttctgCTGCAGACGATTCCAT

Function

symbol description
atpaf2 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton-transporting ATP synthase complex assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency, nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2).

GO:

id name namespace
GO:0043461 proton-transporting ATP synthase complex assembly biological_process

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050411-18 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton-transporting ATP synthase complex assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency, nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2).

Ensembl:

ensembl_id ENSDARG00000056270

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010170 False 1445 mRNA 0.38 8 18410608 18414539
TCONS_00010171 False 748 lncRNA 0.39 4 18410611 18411624
TCONS_00011118 False 788 lncRNA 0.39 5 18410611 18411753
TCONS_00010172 False 883 lncRNA 0.38 4 18410611 18411753
TCONS_00010173 False 726 mRNA 0.38 5 18411584 18414536
TCONS_00010174 True 996 lncRNA 0.34 2 18413442 18414516

Neighbor

gene id symbol gene type direction distance location
XLOC_005296 tom1l2 coding downstream 2020 18381982 ~ 18408588 (-)
XLOC_005295 NA coding downstream 182878 18224534 ~ 18227730 (-)
XLOC_005294 nptx2b coding downstream 513474 17889465 ~ 17897134 (-)
XLOC_005293 baiap2l1a coding downstream 547141 17815725 ~ 17863467 (-)
XLOC_005292 tecpr1a coding downstream 600065 17794284 ~ 17810543 (-)
XLOC_005298 NA coding upstream 38668 18453207 ~ 18454407 (-)
XLOC_005299 tex2l coding upstream 53527 18468066 ~ 18519822 (-)
XLOC_005300 bricd5 coding upstream 137058 18551597 ~ 18560500 (-)
XLOC_005301 pgp coding upstream 151014 18565553 ~ 18568834 (-)
XLOC_005302 zdhhc4 coding upstream 156916 18571455 ~ 18578432 (-)
XLOC_005291 NA non-coding downstream 683068 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 703707 17706792 ~ 17706901 (-)
XLOC_005275 BX000534.1 non-coding downstream 1412166 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 1443800 16964656 ~ 16966808 (-)
XLOC_005303 AL772266.1 non-coding upstream 323874 18738413 ~ 18738529 (-)
XLOC_005318 NA non-coding upstream 1642432 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 1774630 20189169 ~ 20189286 (-)
XLOC_005321 NA non-coding upstream 1900456 20314995 ~ 20334709 (-)

Expression


Co-expression Network