G72917


Basic Information

Item Value
gene id G72917
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29053486 ~ 29054218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86462
GcttctcattaatattaatatgccAAAAATGTACaagaaaacaaatgcagcttgtcatgttacagcgAACAAATGTTaccgttacaaagcgctgacactggagactccttccctcgatgttaaacaaacatctcttcaTGGAAACCTTCCAGACACCAtttaaagtttttctttgtataaaataaaacacattttttacatcTGGATATCATTAGCCTTAGATTAGGTGCCACCATActgttagctgttactatagaaatgatagacAACGACTGTTAATGAACACCTTGCGACCAATCAGAACGGAGAATTCAAGAGTGCTGTGATAGAATGGAGTCTGTACACCAATGTGAAGAGAATATTACATTCCGTCCATTCCCGAAAAAGCTCcagaactgattttatttttaaacagcgTGCTctttgataaaataataaaagtcctCGATAGTGGATAGTGAACATTGAAAGAACTTCACATTCAAAAATTACCCATAATTCCTAGCCCTTGTCTGCTCACCCACAGGTGCATCATGTCCAAAAGTCTGACGCTAATAGAAAAGATGATATCCGTTATTGAAAAAATGCATTACTTTTTTGACGCAATTTTACGAAATTATATTCAATTCAAAGTTCTAAAATTGCTAAAACCTGCTACAATTTTTGTTTGCGCAggcaaatttaatgaaaatagatttttttgtaaCTTCTGGAAAAACAAGAACAGGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86462 True 733 lncRNA 0.35 1 29053486 29054218

Neighbor

gene id symbol gene type direction distance location
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding upstream 10491 28940674 ~ 29042995 (+)
cope cope,LOC107709006,LOC107681743 coding upstream 122954 28923611 ~ 28930532 (+)
LOC117597035 NA coding upstream 147090 28901530 ~ 28906396 (+)
LOC117597120 NA coding upstream 165930 28885151 ~ 28887556 (+)
LOC117597034 NA coding upstream 185308 28863057 ~ 28868178 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding downstream 25966 29080184 ~ 29128564 (+)
miga1 miga1 coding downstream 118538 29172756 ~ 29184256 (+)
LOC113540202 LOC108267626,LOC108437507 coding downstream 142371 29196589 ~ 29205743 (+)
LOC113540294 LOC108267627,LOC108267624 coding downstream 154116 29208334 ~ 29218020 (+)
LOC113539851 LOC108267627 coding downstream 165308 29219526 ~ 29225911 (+)
G72913 NA non-coding upstream 119177 28933983 ~ 28934309 (+)
G72910 NA non-coding upstream 122088 28931076 ~ 28931398 (+)
G72892 NA non-coding upstream 135088 28917742 ~ 28918398 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding upstream 138228 28914629 ~ 28915258 (+)
G72869 NA non-coding upstream 152225 28862416 ~ 28901261 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding downstream 244917 29299135 ~ 29301133 (+)
G73072 NA non-coding downstream 429044 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding downstream 464890 29519108 ~ 29521022 (+)
G73088 NA non-coding downstream 470080 29524298 ~ 29524836 (+)
G73089 NA non-coding downstream 471984 29526202 ~ 29526918 (+)
G72873 NA other upstream 141382 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 256327 28792847 ~ 28797159 (+)
gng5 NA other upstream 292035 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 670064 28302851 ~ 28383422 (+)
fubp1 fubp1 other downstream 127549 29181767 ~ 29196149 (+)
asip2b NA other downstream 565775 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 619296 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1400539 30454757 ~ 30478293 (+)
G73944 NA other downstream 1691913 30746131 ~ 30767132 (+)

Expression


Co-expression Network