G73000 (LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302)


Basic Information

Item Value
gene id G73000
gene name LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29299135 ~ 29301133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86551
GTTGTTATTGAGTTGTAAAGACTGAAGGCACAGTAAGACCACATTTACTGAGTAGCCTTGAAGGACACAGAGGAAATGACTGAAAGGAGGCGATAGAGAGAAATGAGCTAGgaacagaaaaatcacacacaccggCACACACCTAATTGGTAGCTATGAATCAAATATTCgaacaaaaaaatgacaacagtACACCACATTGAAAAGGTTCTGAATCGACGATCGGACGTGTAGTGCAATTCACCTCAGTAAACGCAGCGCTCGTTTTGTAGTGCAATGTTACTTGACATTACACAGCGTGTCCCAagagtctccatacttagtttatattatattcgaGATCCCCAGATGTAAGCCCCACTTGATTTTTACCCGTattggcaatcatgtagaggatgttctggaaataaagttacattttgtaaaaaaaagtgttaatttcccctaagtatggagacttttgggacacggtGTATAACGGTACAGaccatgtgtaaaaatcagaaCTGGGTGAGTGCATGGTTACGACTTGGAAACAAAGTCTATgcttccttaaaaaaaaattctttggtaTCTTCTTTTGCATACATTGCAAATACTTCCTAACATAGGGTCCTATGAGATCCACATTGCTTCTTaacaaaacattatttcatctcattttaaaaaatattttggatatCTTATTTTTAGCATAAGTTATAGCACTTACTAAGCCGAACAAATGCTATATTGTAAAACCttgaatttttcttcatttttttggaCGATGTTGTGTAAACGGTGCTAATCACGTTCAGATTATTTCCAAATATTCCCTGGTGctaatcatttaaacattattcCCAAGGTCATTAGCTATCCCATGTTATGTGATTTCCAAAGCAGCAACAAATGCTAGGCCTATACATTTCAGATATACGGCCAATACGAACAAAACCCtcaaacattaaatatgatatcacaaatattgtgttaattttaatttatcacaTACGTGGAATTATCGAATTCAACGTATGTCCGTGATTAGCGTCTCGGTTTTGTCATTCCGCAGAACTCATAGGGCCCTAATAATGACTATAATGAGTCCTAATGAGGATGGGTAAAATTtcaaccattaaaaaaaaaagcgcaaCATTTTCTCCCGACATGAAACAACAAGACATCTCATGATAACaaacactaaaaacaaaatgaggCTTTGTCTCGCGATCCTGGGCCTCTGTTTAGGGGTCGTTCCTCTGCATGAGCctcaataaattaaacataaacctCATTAGAAGATTGTGATCAGAGGCCAGACGGAGCAAGTGGGCCTCGCACACCCCCATTACCGCTAACAAGGCTCCTGTATTAGCATCAGcgcaacatcacacacacacacacacacacacacacacacacacaccatttctgCAGCTCTTCACCCAGTGCTCTCAGCCAGGCCCATGTGCAAAACTCCTTTAATGAGCATCTGTCAAAGCTACGACATTCCGCAGGCAGCAactccaaaaaaataataatgaaacgTCTCAGAGCACTGCTGCTTTACTTTAACGAGGCTGAGTTTGTATCTGTGTTGTCCTGGGGGCAGAGAAAGTCCGCCTCTCGCCGTGTACTACCTCTTTGCGCTAGCTTGTTCCGTTAGCTGTGTGAGGTACTCGCGCAGTTCCTTGGCTGCCTGGAAGCGGCCGAAGTGCTTCTGAGGCCTGGCGCACTCGTCCAGCAGCGCTGCGAGATGGCCGTCTCGGGCCACATCAGGGGGCGGGTCGTGGAGGAGGCCGCCGGTGGTTCCGCGCCACGTGGCGAAGCGTGACAGCAGGTTCTGGCAGATGGCGTAGTAGTTGTGGTCGACGGTGACGCGCGAGCACAGGATGTCCTTGGAGAACGAGAGGCAGGCTTCCTTGTCGCATTCTTCGTAGCGGCTCTCGTACCACACGTCATAGTTCTCCG

Function

NR:

description
PREDICTED: deleted in autism protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86551 True 1956 lncRNA 0.43 2 29299135 29301133

Neighbor

gene id symbol gene type direction distance location
LOC113539851 LOC108267627 coding upstream 73224 29219526 ~ 29225911 (+)
LOC113540294 LOC108267627,LOC108267624 coding upstream 81115 29208334 ~ 29218020 (+)
LOC113540202 LOC108267626,LOC108437507 coding upstream 93392 29196589 ~ 29205743 (+)
miga1 miga1 coding upstream 114879 29172756 ~ 29184256 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding upstream 170571 29080184 ~ 29128564 (+)
pls1 pls1,LOC108268020,LOC108437523,LOC107681752,LOC107709028 coding downstream 37990 29339123 ~ 29356789 (+)
ephb3a ephb3a,LOC108267069,LOC108437521,LOC107681809,LOC107599837,LOC107708817,LOC107656865,LOC105889460,LOC107722542 coding downstream 88900 29390033 ~ 29423768 (+)
LOC113540045 LOC108267996 coding downstream 154418 29455551 ~ 29459295 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding downstream 180109 29481242 ~ 29496585 (+)
b3gnt5b b3gnt5 coding downstream 199342 29500475 ~ 29513779 (+)
G72917 NA non-coding upstream 244917 29053486 ~ 29054218 (+)
G72913 NA non-coding upstream 364826 28933983 ~ 28934309 (+)
G72910 NA non-coding upstream 367737 28931076 ~ 28931398 (+)
G72892 NA non-coding upstream 380737 28917742 ~ 28918398 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding upstream 383877 28914629 ~ 28915258 (+)
G73072 NA non-coding downstream 182129 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding downstream 217975 29519108 ~ 29521022 (+)
G73088 NA non-coding downstream 223165 29524298 ~ 29524836 (+)
G73089 NA non-coding downstream 225069 29526202 ~ 29526918 (+)
G73092 NA non-coding downstream 239962 29541095 ~ 29541435 (+)
fubp1 fubp1 other upstream 102986 29181767 ~ 29196149 (+)
G72873 NA other upstream 387031 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 501976 28792847 ~ 28797159 (+)
gng5 NA other upstream 537684 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 915713 28302851 ~ 28383422 (+)
asip2b NA other downstream 318860 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 372381 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1153624 30454757 ~ 30478293 (+)
G73944 NA other downstream 1444998 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1760597 31061730 ~ 31097929 (+)

Expression


Co-expression Network