G73154


Basic Information

Item Value
gene id G73154
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29718462 ~ 29719317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86720
aaaatacaagaaagTCATAATAGCTAAAAAACTATTAAGGCTGTTGATGCTTACATCTGCGTGCCATTTAAAGAGGGCGTGTAGATGATGGATCATTAATACGATCGATCCTGAAGGCGCTCGCTGTCTGTCCTCCAATGTGTTACAGCATATGGACTTATACAATAAACTTCAGCCTCGTACGCCGTAACGCGGTGGGGTCTCGAGTTACGGCTGTCGCGCTGCAGATGTAACCGTCGATAGCCTTGAAGGCGACCTGCGATTTCTCCTTCAACGAAAGAAACAAACAGTACAGAAAAAACAATCGTGGAGGATGAAGTGCTTAAAAAAATCTTAGTCTCGTCATAGTGAGTGACTGAATATTGTGagatttattttgcaatttgaataaaaaacGTTGGCAGTGcaagttaaattattattaatcaccAGTACGCAGTTTGACTGTGGCTGCATCCGGTAAAGTCGCACAAAACAGCTCAAAATCTCACGATTTTCTGTCTCCAAAGCTACAGCGAAGACGAGCAACCTCCTCATCCCCAGAGTTAAACCcgtctgatgatgatgatgatgatgatgatgataaagctAATCTAGAGAGCACTCCAAGCTAGTTAGTAAATTAGTTAGTGAACACCAGAGAAACACCTTCACCGAAAATATCACACACAACATACCATAATTTCTGCAAtttgacagaagaagaaaaaattaagAATCATTCTGGGAGAAGGAAACACTGCAGCCTTCGCTGCAAAGTATGTGTCAGAATGTGAGAGCCTGAGGGACAGCGAGAcaccgagtgtcctgcacacaccctgaatacacacaccatgttcacaTACTTACCTATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86720 True 856 lncRNA 0.42 1 29718462 29719317

Neighbor

gene id symbol gene type direction distance location
LOC113540482 LOC108267690 coding upstream 115632 29596466 ~ 29602830 (+)
LOC113540073 NA coding upstream 159337 29554015 ~ 29559125 (+)
ccdc39 ccdc39 coding upstream 164915 29541983 ~ 29553547 (+)
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 178447 29534634 ~ 29540015 (+)
b3gnt5b b3gnt5 coding upstream 204683 29500475 ~ 29513779 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 32754 29752071 ~ 29760972 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 248354 29967671 ~ 29976291 (+)
rgs1 LOC108267137 coding downstream 266868 29986185 ~ 29989435 (+)
rgs13 LOC108268340 coding downstream 279187 29998504 ~ 30001345 (+)
blvra blvra coding downstream 295338 30014655 ~ 30022571 (+)
G73151 NA non-coding upstream 5780 29712470 ~ 29712682 (+)
G73118 NA non-coding upstream 88639 29629593 ~ 29629823 (+)
G73092 NA non-coding upstream 177027 29541095 ~ 29541435 (+)
G73089 NA non-coding upstream 191544 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 193626 29524298 ~ 29524836 (+)
G73123 NA non-coding downstream 2749 29722066 ~ 29723750 (+)
G73155 NA non-coding downstream 13334 29732651 ~ 29733363 (+)
G73169 NA non-coding downstream 45803 29765120 ~ 29766106 (+)
G73185 NA non-coding downstream 73199 29792516 ~ 29794205 (+)
G73512 NA non-coding downstream 210621 29929938 ~ 29930168 (+)
zgc:153115 LOC108268059 other upstream 37287 29673514 ~ 29681175 (+)
asip2b NA other upstream 94665 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 522313 29181767 ~ 29196149 (+)
G72873 NA other upstream 806358 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 921303 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 735440 30454757 ~ 30478293 (+)
G73944 NA other downstream 1026814 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1342413 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1631884 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 2040572 31759889 ~ 31776798 (+)

Expression


Co-expression Network