LOC113540203


Basic Information

Item Value
gene id LOC113540203
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28940662 ~ 29029191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86785
GCACGCGCTGGTCACGTGCTCACGGCGCATTTTTCCTCTCAGCACGGTTTCCCGCTATAAACACTACTAAAACGatataaaacatgaacaaacattTATGaGGATTTGAATGCTACTGTTTGCTGAAAGGAAAGTCAAATGGCCATCAAATGAGCTTTTAGGGGTATGTCGTATTCTCTCCAAGGCAAATCACCAAAAGCCAGTAAGGACACACACTGGAGGCGCAGTgtccattttaaacacaaagctGTGCATCTGTGAATGAATGGCttcataataaaacaataaaacagcagtgtgtgtgtgggtgtgtgggtgtgtgtgtgtatttataccccagCTCAGAGACTCACCTTACAGATCCAGGCCATTCTGCTCGGCAGTGCACCGTTATGTGGCCCGCGGTGTCGGTGTCGGTGTCGGTGTCGGTGTGGGCTTTACGGGGTGAAAGCCGGATCCTCTTCCCCTCCTGCCGCTCGCTGTTTACACCGTGAAATCCCCACACTGAGGAGAAAGCCCCGCATTCTGCCCGAGTGCTTTACCGTCGCCTTacttctattatttctatttttctaaaGAGCCTCATCTCGGCGTCTGCTCCTATTGGCGGTTCGTCTCGC
>XR_003404005.2
TCGCGCACGCGCTGGTCACGTGCTCACGGCGCATTTTTCCTCTCAGCACGGTTTCCCGCTATAAACACTACTAAAACGatataaaacatgaacaaacattTATGaGGATTTGAATGCTACTGTTTGCTGAAAGGAAAGTCAAATGGCCATCAAATGAGCTTTTAGGGGTATGTCGTATTCTCTCCAAGGCAAATCACCAAAAGCCAGTAAGGACACACACTGGAGGCGCAGTgtcca
>XR_004577953.1
TCGCGCACGCGCTGGTCACGTGCTCACGGCGCATTTTTCCTCTCAGCACGGTTTCCCGCTATAAACACTACTAAAACGatataaaacatgaacaaacattTATGaGGATTTGAATGCTACTGTTTGCTGAAAGGAAAGTCAAATGGCCATCAAATGAtaacTGCCGTAACCACAGAGAGAAAGCGTGATATAGCTGGCGGTGCTTGCGAGACACGCACaaacacatgcacgcacacacacacacccacatgctgCGAAGCATGAACTTTG
>XR_004577954.1
TCGCGCACGCGCTGGTCACGTGCTCACGGCGCATTTTTCCTCTCAGCACGGTTTCCCGCTATAAACACTACTAAAACGatataaaacatgaacaaacattTATGaGGATTTGAATGCTACTGTTTGCTGAAAGGAAAGTCAAATGGCCATCAAATGAagaaaccagagagcataaactcctgtcctgaagacttccctgTGCTGATCACCTTCGCAAAGCattgtgactgttacaaagtgcttacacccgagactccttccataaatgttaa
>XR_004577955.1
TCGCGCACGCGCTGGTCACGTGCTCACGGCGCATTTTTCCTCTCAGCACGGTTTCCCGCTATAAACACTACTAAAACGatataaaacatgaacaaacattTATGaGGATTTGAATGCTACTGTTTGCTGAAAGGAAAGTCAAATGGCCATCAAATGAtaacTGCCGTAAccacagagagaaagtgtgatATAGCTGGCGGCGCTTGCAAGACACGCACatacgcatgcacgcacacacacacccacatgctgCGAAGCATGAACTTTGAGTAGttgaaagtgtgctgaaaagcgCGGACTGAATAAACGCGAGCTCGGAGCTCAGCAAAAAATTCAGCCTGTCTCTcaagtcttcctccacacactcacacaccaggGTTCTACACTGACCTATTAAGAAGATCGACCAGTGGTTGTCTTGCGATCGACAGATCGATCGCAGTTGACGTATGGAGCATCCCTGTTGTAAAGACTTCGCAAAGAGAAACAAAGGTTACTATATTTTCCAGACTAATAGGTGCTGTGACTTCCACAGCAAACCAACGTATTTGTTATAATGTTTGCATTTGCTTAATTGTAATGTTGTAATGGTGGTCATTCTACGCGAGCAGTTACCATCGCTAGCTTAGCGTTAACACTGAAAACGCTGTAGGCACGCtagcagggggaaaaaaaagcttcttaTAAAGTGAATTATGAGGTTTCATCATTAACTATTGGTATTTAATGTAACACTAGCTGAACATTAACAAAAGGTTTAATTTAGAGATGTTATtttccagacattttttttttcttcatgtgtatCTTTTCACACTAAACACTGAAGGTCTCACAATCAGATCTTCTCCATTTCTGTTTGCTGATCTTGCTTTTTTCCTAGATAAAAATACCAATATGTTTCCTCTCCGAGGCTGTGCTGACAAAGTGCTTTTCCATTGTCTGCTACACTTTTCCCATCGAGATTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86785 False 620 lncRNA 0.49 3 28940662 29029187
XR_003404005.2 False 237 lncRNA 0.46 3 28941049 29029191
XR_004577953.1 False 270 lncRNA 0.47 3 29013240 29029191
XR_004577954.1 False 272 lncRNA 0.44 3 29027665 29029191
XR_004577955.1 True 971 lncRNA 0.42 3 29015014 29029191

Neighbor

gene id symbol gene type direction distance location
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 22510 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 60460 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 79219 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 112698 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 154907 28763304 ~ 28785755 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 25821 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 101995 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 271115 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 303928 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 330309 29359500 ~ 29371526 (-)
LOC117597038 NA non-coding downstream 43863 28892016 ~ 28896799 (-)
G72893 NA non-coding downstream 106942 28832384 ~ 28833720 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 156522 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 222707 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 272019 28667323 ~ 28668643 (-)
G73264 NA non-coding upstream 14569 29043760 ~ 29043970 (-)
G73248 NA non-coding upstream 24406 29053597 ~ 29054227 (-)
G73247 NA non-coding upstream 98864 29128055 ~ 29196167 (-)
G73249 fubp1 non-coding upstream 158967 29188158 ~ 29189340 (-)
G73318 LOC107599861 non-coding upstream 184362 29213553 ~ 29215051 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 55697 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 148833 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 288237 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 703857 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 704395 28236186 ~ 28236267 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 119447 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 535030 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 695397 29724588 ~ 29730857 (-)
G73619 blvra other upstream 990315 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1712336 30741527 ~ 30750968 (-)

Expression


Co-expression Network