G73248


Basic Information

Item Value
gene id G73248
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29053597 ~ 29054227 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86819
gaaCTGTTCCTTAACCTGTTCTTGTTTTTCCAGAAGttacaaaaaaatctattttcattaaatttgccTGCGCAAACAAAAATTGTAGCAGGTTTTAGCAATTTTAGAACTTTGAATTGAATATAATTTCGTAAAATTGCGTCAAAAAAGTAATGCATTTTTTCAATAACGGATATCATCTTTTCTATTAGCGTCAGACTTTTGGACATGATGCACCTGTGGGTGAGCAGACAAGGGCTAGGAATTATGGGTAATTTTTGAATGTGAAGTTCTTTCAATGTTCACTATCCACTATCGaggacttttattattttatcaaagAGCAcgctgtttaaaaataaaatcagttctgGAGCTTTTTCGGGAATGGACGGAATGTAATATTCTCTTCACATTGGTGTACAGACTCCATTCTATCACAGCACTCTTGAATTCTCCGTTCTGATTGGTCGCAAGGTGTTCATTAACAGTCGTTgtctatcatttctatagtaacagctaacagTATGGTGGCACCTAATCTAAGGCTAATGATATCCAgatgtaaaaaatgtgttttattttatacaaagaaaaactttaaaTGGTGTCTGGAAGGTTTCCAtgaagagatgtttgtttaacatcgagg

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86819 True 631 lncRNA 0.34 1 29053597 29054227

Neighbor

gene id symbol gene type direction distance location
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 135445 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 173395 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 192154 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 225633 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 267842 28763304 ~ 28785755 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 785 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 76959 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 246079 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 278892 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 305273 29359500 ~ 29371526 (-)
G73264 NA non-coding downstream 9627 29043760 ~ 29043970 (-)
LOC113540203 NA non-coding downstream 24406 28940662 ~ 29029191 (-)
G73243 NA non-coding downstream 65214 28986472 ~ 28988383 (-)
LOC117597038 NA non-coding downstream 156798 28892016 ~ 28896799 (-)
G72893 NA non-coding downstream 219877 28832384 ~ 28833720 (-)
G73247 NA non-coding upstream 73828 29128055 ~ 29196167 (-)
G73249 fubp1 non-coding upstream 133931 29188158 ~ 29189340 (-)
G73318 LOC107599861 non-coding upstream 159326 29213553 ~ 29215051 (-)
G73319 NA non-coding upstream 162043 29216270 ~ 29218158 (-)
G73327 NA non-coding upstream 219362 29273589 ~ 29320334 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 168632 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 261768 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 401172 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 816792 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 817330 28236186 ~ 28236267 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 94411 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 509994 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 670361 29724588 ~ 29730857 (-)
G73619 blvra other upstream 965279 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1687300 30741527 ~ 30750968 (-)

Expression


Co-expression Network