G73444


Basic Information

Item Value
gene id G73444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29765747 ~ 29766115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87028
aagcatgatgCCAATGCAATCTGAACCAGTGCTGCTTCGTTAGAACCTGCGGGAGTTTCCATCCCGCAGGGTTTTTAGCTATATGGCTCATTCAAGAGCACGCCAAATGGAACATTCCACGAGAGCTTTGTCGTGATTCGAGCAGGGAATTAAGGCCTGGACTTTAAATGAGCAGGTCTGCATTAGCAAAATGATAAGCTGTAACgtgtttttcttctccttttagCATCACTAGAAACCCATCatcttcgtcttcttcttcttcttgaacTAGAACCTACACTGAACATgagcatatatttattttgtaaagctATCCATCACATTCCAGTGTGCGTGCATTCCACATGAGCTGAGCTCTGtccactt

Function

GO:

id name namespace
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87028 True 369 lncRNA 0.43 1 29765747 29766115

Neighbor

gene id symbol gene type direction distance location
cdc14aa LOC108267888,LOC108411489 coding downstream 17634 29732265 ~ 29748113 (-)
si:ch211-13f8.1 LOC108267891 coding downstream 60065 29693378 ~ 29705682 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding downstream 73192 29681244 ~ 29692555 (-)
LOC113539879 LOC108267234 coding downstream 98892 29629970 ~ 29666855 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 172920 29576698 ~ 29592827 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding upstream 93 29766208 ~ 29794142 (-)
ddr2b LOC108267138 coding upstream 30955 29797070 ~ 29812557 (-)
nos1apb LOC108267139 coding upstream 47412 29813527 ~ 29825141 (-)
rgs5b LOC108267191 coding upstream 67547 29833662 ~ 29835191 (-)
brinp3b LOC108267163 coding upstream 102476 29868591 ~ 29899526 (-)
G73448 NA non-coding downstream 115 29765124 ~ 29765632 (-)
G73479 NA non-coding downstream 1956 29763505 ~ 29763791 (-)
G73459 LOC108267889 non-coding downstream 51337 29713999 ~ 29714410 (-)
G73458 LOC108267889 non-coding downstream 52301 29712893 ~ 29713446 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding downstream 53553 29711086 ~ 29712194 (-)
G73481 NA non-coding upstream 12440 29778555 ~ 29780132 (-)
G73485 NA non-coding upstream 26097 29792212 ~ 29793644 (-)
G73492 NA non-coding upstream 80559 29846674 ~ 29846891 (-)
G73607 NA non-coding upstream 163149 29929264 ~ 29929489 (-)
G73618 NA non-coding upstream 210556 29976671 ~ 30025036 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 34890 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 190020 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 593826 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 880782 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 973918 28787614 ~ 28791829 (-)
G73619 blvra other upstream 253391 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 975412 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1007334 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1480945 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 2104403 31870518 ~ 31871874 (-)

Expression


Co-expression Network