G73457 (rc3h1,LOC108267889,LOC108437509)


Basic Information

Item Value
gene id G73457
gene name rc3h1,LOC108267889,LOC108437509
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29711086 ~ 29712194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87041
GCAGCAAATACAGTCGTTTGTGCAGCATGTGGACAGATACTGActtctccagctcctcctgcgAGTGGGCGAAGGTGCAGCTGGCACCGCGGGGGCAGCCTCCTTTCTGCTTCATGTCACGGCACATGTAGGTTTTGTACTTGCTGTGCTGCGGCGGCTGCTGCTGCTCCGTGCCCTTCTTGCTGTGGTTCTGGATGAAGTCCACCAGTCCGTGCACCACGGTCTTCACAGCTACCAGGCCCTTCTCCAGCTGCTCCCATGTTGGAGGGGGAGCATCTGAGCCCAAACGACAGCAAAAGAACAATGTCAGGGTTCAAGAAATTCCCCAACATCCACATATTGTGTGCTACGTGAACACTGAACATtttttttttgtacagacGCCAGACAGTTAGGCAATGGGGTGTGACTCACAGAGTtatccaaacaaaataaaaccctCCAAACATCCACAGATTACATCTTCCCTTTCctgtttgtactttttaaagCGTGAAAATTGTGGAATAAGATGTTGTGGCTACGTATTATTCTCAGAAAtctaaacatttacatttttttccgcCTCCTTACATATCTTGACTCTCAGTCACACGACACGACTCGTACGTTTTCACGTCACAGCATGTCAATCTGCCGTGTTTACTCTCTCAACCCCACCACATCGGTGTGGATGTTTCTGATCCAGCTCCTGATAGGAAAATCTAGCTTCAAGTCTTGACAAATGGAGTGTTTACCCGGCTGTTAAAAATAGCAAGCGATAAGGAGAACAATTCCGGTAAACAAGGAGAAATGCGTTTCCTTATAGGAAAGAAGAGTTCGGAAATTTGTGGTATAGtagtttgtgtatttgcttATAACGGCACATTTTTAAAGAGGAAATTACTGGTTATAGAAACTTCaggaatatttatgaaaatgcagtTCTTCCTGATttgcagatttaaaaatatctataaGAATACAATAAGCTGATTTAACAGTCTTGATGTTCTTCTTGACACGTGTCACATCTGGATATACGGATACTAATAgtatatattttcaattttgtta

Function

symbol description
rc3h1 Enables CCR4-NOT complex binding activity; RNA binding activity; and ubiquitin-protein transferase activity. Involved in nuclear-transcribed mRNA catabolic process; protein polyubiquitination; and regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Located in P-body.

NR:

description
PREDICTED: roquin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87041 True 1056 lncRNA 0.43 2 29711086 29712194

Neighbor

gene id symbol gene type direction distance location
si:ch211-13f8.1 LOC108267891 coding downstream 5404 29693378 ~ 29705682 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding downstream 18531 29681244 ~ 29692555 (-)
LOC113539879 LOC108267234 coding downstream 44231 29629970 ~ 29666855 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 118259 29576698 ~ 29592827 (-)
LOC113540703 NA coding downstream 186025 29524989 ~ 29525061 (-)
cdc14aa LOC108267888,LOC108411489 coding upstream 20071 29732265 ~ 29748113 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding upstream 54014 29766208 ~ 29794142 (-)
ddr2b LOC108267138 coding upstream 84876 29797070 ~ 29812557 (-)
nos1apb LOC108267139 coding upstream 101333 29813527 ~ 29825141 (-)
rgs5b LOC108267191 coding upstream 121468 29833662 ~ 29835191 (-)
G73452 LOC108268059 non-coding downstream 36816 29671187 ~ 29674270 (-)
G73439 NA non-coding downstream 103281 29607601 ~ 29607805 (-)
G73423 NA non-coding downstream 170730 29540095 ~ 29540356 (-)
G73327 NA non-coding downstream 390752 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 492928 29216270 ~ 29218158 (-)
G73458 LOC108267889 non-coding upstream 699 29712893 ~ 29713446 (-)
G73459 LOC108267889 non-coding upstream 1805 29713999 ~ 29714410 (-)
G73479 NA non-coding upstream 51311 29763505 ~ 29763791 (-)
G73448 NA non-coding upstream 52930 29765124 ~ 29765632 (-)
G73444 NA non-coding upstream 53553 29765747 ~ 29766115 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 135359 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 539165 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 826121 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 919257 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 1058661 28648324 ~ 28652425 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 12394 29724588 ~ 29730857 (-)
G73619 blvra other upstream 307312 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1029333 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1061255 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1534866 31247060 ~ 31277249 (-)

Expression


Co-expression Network