G73545


Basic Information

Item Value
gene id G73545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30110612 ~ 30111156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87146
gatATTGAGACATGTAGCATTACAAGTTCctccattttaaaacataatgaaaaacAGTTTCATGATTGCGAGTTAGACTGTTAAAGAGCCACCATTGGCCCTTGGGTAAAACCCTTAACTGCTCCAGCTACATGCTTGGATTACATTCTGCCTCACAGTTACAAATATATTCCTGTTAGTCTTTAAAATAATATCTTTCATAAACAAAAATTTTATGAACATATTAGGGAAGGTGTTTTAGGATTATACTAGTTGACGACatagagagatgaacagagaaatttagctagctcatgttacaCCACGGCGATGCTGAATTCTCAATCCTGACTTGTTATTGTCGATATggagaagttttctgtgaggagactcttatgtagcatttttggaaggagtctccagtgtcagcgctttgtaaaagtcGGCAGGTTTTCCGTCATAGGAAAGTCTTCGGGACAAAGGCTGGTGTACTGTTTGTAgcgtaagtaataacaggaacgaactgtaactgtaatgtaactgtaatcaataaaattatgatgtgg

Function

GO: NA

KEGG:

id description
ko04625 C-type lectin receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU87146 True 545 lncRNA 0.37 1 30110612 30111156

Neighbor

gene id symbol gene type direction distance location
keap1a keap1a,LOC108268010,LOC108428896,LOC107721712,LOC107690048,LOC107588875,LOC107749088 coding upstream 777 30097705 ~ 30109835 (+)
ebi3 LOC108267125 coding upstream 60122 30045895 ~ 30050490 (+)
blvra blvra coding upstream 88041 30014655 ~ 30022571 (+)
rgs13 LOC108268340 coding upstream 109267 29998504 ~ 30001345 (+)
rgs1 LOC108267137 coding upstream 121177 29986185 ~ 29989435 (+)
zgc:110158 zgc:110158,LOC108267812,LOC108428898,LOC107678694,LOC105906991,LOC107690032 coding downstream 27847 30139003 ~ 30194574 (+)
znf622 znf622,LOC107721690 coding downstream 88538 30199694 ~ 30204010 (+)
d2hgdh d2hgdh coding downstream 94042 30205198 ~ 30211975 (+)
otomp otomp,LOC108267868,LOC108428860,LOC107602611,LOC107690301 coding downstream 113887 30225043 ~ 30237040 (+)
hs6st1a hs6st1a,hs6st1b,LOC108267822,LOC107727332,LOC107748934,LOC107678693,LOC107588870 coding downstream 227714 30338870 ~ 30447632 (+)
G73564 NA non-coding upstream 25793 30084438 ~ 30084819 (+)
G73533 NA non-coding upstream 77824 30032310 ~ 30032788 (+)
G73512 NA non-coding upstream 180444 29929938 ~ 29930168 (+)
G73185 NA non-coding upstream 316407 29792516 ~ 29794205 (+)
G73169 NA non-coding upstream 344506 29765120 ~ 29766106 (+)
G73567 NA non-coding downstream 1233 30112389 ~ 30112630 (+)
G73568 NA non-coding downstream 6850 30118006 ~ 30118492 (+)
G73571 NA non-coding downstream 11867 30123023 ~ 30123250 (+)
G73576 NA non-coding downstream 19324 30130480 ~ 30130707 (+)
G73578 NA non-coding downstream 23496 30134652 ~ 30134865 (+)
zgc:153115 LOC108268059 other upstream 429437 29673514 ~ 29681175 (+)
asip2b NA other upstream 486815 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 914463 29181767 ~ 29196149 (+)
G72873 NA other upstream 1198508 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 1313453 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 343601 30454757 ~ 30478293 (+)
G73944 NA other downstream 634975 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 950574 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1240045 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1648733 31759889 ~ 31776798 (+)

Expression


Co-expression Network