G73656 (LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088)


Basic Information

Item Value
gene id G73656
gene name LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30101440 ~ 30102870 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87279
TGAAGTGACTGTTGATATACTCCCGACACCGCTGATGCAGCTCGACACAGCCTATCTCCTCTGCAAACCGGGCAATCCCAATGACGTTTGAGGGCTCTAGGTTCTTCATCAGGAAGTCACAGCATGCTTTCGCCACGTCCTCCATTTGGAAGCGCATGGCAGCCAGCAGGACGTGCAGCACACACTTTTCCCCTACTGTGATGCGGGAGGTATAGGCATAGTCCACCAACCTACTGATCACCTGAGGGCAAACATCCCTGAGAGTCACCTCTGAGGCCTGGCACTCCTTGAAGTTGCTGGTGAACATGGCTTTGAAGTATGGGCTGCAGGCTGCCAGTACCTTGAAATCAACCATCGTATCTTTGTACGTCACTCGAAGTACCAGGTCACAGAGCAGTCCGTGTTGACGCAACTCATCCATGAGATGAAGGGCTCTGGAAGGGTGACTCTCAATGGTGTAGTCCAGATAGCCATGGCCTTTCATCGAGGGCACCACGATGGCTGAAAAATCCTCATCTTTGATGGGCCTCTTCTTCCTTGGACATATCATTCTCCAAGCCTGGGTTGTAATTCGGTTTCACAAGATACAGGGCAGGTAAAATAGTCTAGATCCAACCACGTGTCATGAAGTAATACAGACACAACTGGTAGTCACTGGGAGATaggaagccattttttttttgtctgactCTAAATCCATCGTGACTGGGGTCTCTCGCAGACCAAATAGGCATCTTTAAATGACCCGGACCAAATATCGAGAGAATGTCACATAGATACCAACAAATGAACCTCAAACGAGCATCAAAAGAACTAGATGTCAGACATCCTAAATCCACACAACGTCTTCTCAACTGCAGTTCATTTTCTTCAAGTGTGACTCTGCATTACGCCTTGTGCTCTCTGATTAg

Function

NR:

description
PREDICTED: kelch-like ECH-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87279 True 911 lncRNA 0.48 2 30101440 30102870

Neighbor

gene id symbol gene type direction distance location
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 16579 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 44720 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 58429 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 64374 30025069 ~ 30037066 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 86875 29903744 ~ 30014565 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 109519 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 490836 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 618162 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 1187951 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 1251032 31353902 ~ 31356972 (-)
G73652 NA non-coding downstream 3467 30095790 ~ 30097973 (-)
G73618 NA non-coding downstream 76404 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 171951 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 254549 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 307796 29792212 ~ 29793644 (-)
LOC113540631 NA non-coding upstream 25858 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 84026 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 92809 30195679 ~ 30197576 (-)
G73834 NA non-coding upstream 374533 30477403 ~ 30478234 (-)
G73977 NA non-coding upstream 667227 30770097 ~ 30771174 (-)
G73619 blvra other downstream 78915 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 370583 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 525713 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 929519 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1216475 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 638657 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 670579 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1144190 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1767648 31870518 ~ 31871874 (-)
G74547 NA other upstream 1771439 31874309 ~ 31874827 (-)

Expression


Co-expression Network