G73834


Basic Information

Item Value
gene id G73834
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30477403 ~ 30478234 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87486
TTATCCCAACAACAAATTAATGTGAATGTCCTTTGCGTTCTCGGATTGATTAAAAACGATACAGTAGAtgcagagaagagaaaaaaaaaaaaaactcaggtgcagttcaaaaacaaaatgaaatttctTCAATCTAATCAGATGTGGGGCAAAAGCACTTTTAcgatatgtttatattaaccCTTATTACACTTGAAACAGGTGGGAATTATAAAAGACTGTTTAGGAATCACGCAAAACAGCAACTGAAGAGTATTTTCGTCAGCACAATAGTTGAATAAATTAGCCTTTCCTATTGaacgatgaaaaaaaaagaaatgcgcGTTACCGTTTTCTCACTTCAGCACATCATTTGATAACGTCATGATTTTCTCACTCaccagatggatggatgtttcaCCTTTAGAGCACTGACTTAACAGGTACTGCAGtcagaatgcacacacacacacacacacttacacacacttacacacacttacacacacttacacacacttggGCAGGTGCTGGTCGGACTCACAGGAAAGGCAATGATATTTGTTAATAGCGCTTCAGACCCAGCCATGACTATGCCTCATATACGATTTCCCACAATTCCAAAGTAAACCTACGTGATCTGCTCTTCGTCTGTTTCCTCCGAGTCCTGCCACACGCCCCATGCATACACAAATGAGAGAGGTTGAATCATTTCCATTCAAGTTTTCACAGCGCCAACGTGGACCCCGCTCCAGGagaatagctttttttttttttttttaaaaggaaaattgaga
>TU87487
TTATCCCAACAACAAATTAATGTGAATGTCCTTTGCGTTCTCGGATTGATTAAAAACGATACAGTAGAtgcagagaagagaaaaaaaaaaaaaactcaggtgcagttcaaaaacaaaatgaaatttctTCAATCTAATCAGATGTGGGGCAAAAGCACTTTTAcgatatgtttatattaaccCTTATTACACTTGAAACAGGTGGGAATTATAAAAGACTGTTTAGGAATCACGCAAAACAGCAACTGAAGAGTATTTTCGTCAGCACAATAGTTGAATAAATTAGCCTTTCCTATTGaacgatgaaaaaaaaagaaatgcgcGTTACCGTTTTCTCACTTCAGCACATCATTTGATAACGTCATGATTTTCTCACTCaccagatggatggatgtttcaCCTTTAGAGCACTGACTTAACAGGTACTGCAGtcagaatgcacacacacacacttacacacacttacacacacttacacacacttacacacacttggGCAGGTGCTGGTCGGACTCACAGGAAAGGCAATGATATTTGTTAATAGCGCTTCAGACCCAGCCATGACTATGCCTCATATACGATTTCCCACAATTCCAAAGTAAACCTACGTGATCTGCTCTTCGTCTGTTTCCTCCGAGTCCTGCCACACGCCCCATGCATACACAAATGAGAGAGGTTGAATCATTTCCATTCAAGTTTTCACAGCGCCAACGTGGACCCCGCTCCAGGagaatagctttttttttttttttttaaaaggaaaattgaga
>TU87488
TTATCCCAACAACAAATTAATGTGAATGTCCTTTGCGTTCTCGGATTGATTAAAAACGATACAGTAGAtgcagagaagagaaaaaaaaaaaaaactcaggtgcagttcaaaaacaaaatgaaatttctTCAATCTAATCAGATGTGGGGCAAAAGCACTTTTAcgatatgtttatattaaccCTTATTACACTTGAAACAGGTGGGAATTATAAAAGACTGTTTAGGAATCACGCAAAACAGCAACTGAAGAGTATTTTCGTCAGCACAATAGTTGAATAAATTAGCCTTTCCTATTGaacgatgaaaaaaaaagaaatgcgcGTTACCGTTTTCTCACTTCAGCACATCATTTGATAACGTCATGATTTTCTCACTCaccagatggatggatgtttcaCCTTTAGAGCACTGACTTAACAGGTACTGCAGtcagaatgcacacacacacacacacacacacttacacacacttacacacacttacacacacttacacacacttggGCAGGTGCTGGTCGGACTCACAGGAAAGGCAATGATATTTGTTAATAGCGCTTCAGACCCAGCCATGACTATGCCTCATATACGATTTCCCACAATTCCAAAGTAAACCTACGTGATCTGCTCTTCGTCTGTTTCCTCCGAGTCCTGCCACACGCCCCATGCATACACAAATGAGAGAGGTTGAATCATTTCCATTCAAGTTTTCACAGCGCCAACGTGGACCCCGCTCCAGGagaatagctttttttttttttttttaaaaggaaaattgaga
>TU87489
TTATCCCAACAACAAATTAATGTGAATGTCCTTTGCGTTCTCGGATTGATTAAAAACGATACAGTAGAtgcagagaagagaaaaaaaaaaaaaactcaggtgcagttcaaaaacaaaatgaaatttctTCAATCTAATCAGATGTGGGGCAAAAGCACTTTTAcgatatgtttatattaaccCTTATTACACTTGAAACAGGTGGGAATTATAAAAGACTGTTTAGGAATCACGCAAAACAGCAACTGAAGAGTATTTTCGTCAGCACAATAGTTGAATAAATTAGCCTTTCCTATTGaacgatgaaaaaaaaagaaatgcgcGTTACCGTTTTCTCACTTCAGCACATCATTTGATAACGTCATGATTTTCTCACTCaccagatggatggatgtttcaCCTTTAGAGCACTGACTTAACAGGTACTGCAGtcagaatgcacacacacacacacacacacacacacacttacacacacttacacacacttacacacacttacacacacttggGCAGGTGCTGGTCGGACTCACAGGAAAGGCAATGATATTTGTTAATAGCGCTTCAGACCCAGCCATGACTATGCCTCATATACGATTTCCCACAATTCCAAAGTAAACCTACGTGATCTGCTCTTCGTCTGTTTCCTCCGAGTCCTGCCACACGCCCCATGCATACACAAATGAGAGAGGTTGAATCATTTCCATTCAAGTTTTCACAGCGCCAACGTGGACCCCGCTCCAGGagaatagctttttttttttttttttaaaaggaaaattgaga
>TU87490
TTATCCCAACAACAAATTAATGTGAATGTCCTTTGCGTTCTCGGATTGATTAAAAACGATACAGTAGAtgcagagaagagaaaaaaaaaaaaaactcaggtgcagttcaaaaacaaaatgaaatttctTCAATCTAATCAGATGTGGGGCAAAAGCACTTTTAcgatatgtttatattaaccCTTATTACACTTGAAACAGGTGGGAATTATAAAAGACTGTTTAGGAATCACGCAAAACAGCAACTGAAGAGTATTTTCGTCAGCACAATAGTTGAATAAATTAGCCTTTCCTATTGaacgatgaaaaaaaaagaaatgcgcGTTACCGTTTTCTCACTTCAGCACATCATTTGATAACGTCATGATTTTCTCACTCaccagatggatggatgtttcaCCTTTAGAGCACTGACTTAACAGGTACTGCAGtcagaatgcacacacacacacacacttacacacacttacacacacttacacacacttacacacacttggGCAGGTGCTGGTCGGACTCACAGGAAAGGCAATGATATTTGTTAATAGCGCTTCAGACCCAGCCATGACTATGCCTCATATACGATTTCCCACAATTCCAAAGTAAACCTACGTGATCTGCTCTTCGTCTGTTTCCTCCGAGTCCTGCCACACGCCCCATGCATACACAAATGAGAGAGGTTGAATCATTTCCATTCAAGTTTTCACAGCGCCAACGTGGACCCCGCTCCAGGagaatagctttttttttttttttttaaaaggaaaattgaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87486 False 776 lncRNA 0.39 2 30477403 30478234
TU87487 False 770 lncRNA 0.39 2 30477403 30478234
TU87488 False 780 lncRNA 0.39 2 30477403 30478234
TU87489 True 786 lncRNA 0.39 2 30477403 30478234
TU87490 False 774 lncRNA 0.39 2 30477403 30478234

Neighbor

gene id symbol gene type direction distance location
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 254083 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 392542 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 420683 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 434392 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 440337 30025069 ~ 30037066 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 115472 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 242798 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 812587 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 875668 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 882413 31360647 ~ 31364271 (-)
G73684 NA non-coding downstream 279827 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 286282 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 338531 30128728 ~ 30138872 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding downstream 374533 30101440 ~ 30102870 (-)
G73652 NA non-coding downstream 379430 30095790 ~ 30097973 (-)
G73977 NA non-coding upstream 291863 30770097 ~ 30771174 (-)
G73974 NA non-coding upstream 299525 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding upstream 358118 30836352 ~ 30838110 (-)
G74047 NA non-coding upstream 552155 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 578251 31056485 ~ 31116436 (-)
G73619 blvra other downstream 454878 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 746546 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 901676 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 1305482 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1592438 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 263293 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 295215 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 768826 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1392284 31870518 ~ 31871874 (-)
G74547 NA other upstream 1396075 31874309 ~ 31874827 (-)

Expression


Co-expression Network