LOC113540055 (LOC108268301)


Basic Information

Item Value
gene id LOC113540055
gene name LOC108268301
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30741527 ~ 30750968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87613
GAAAGATGTACGCTAATGGAGGTCCCTCCCCCAACAATAAGACCAAGTGCACTCAGACCCGAACGTCTCAGAAGACGGCGAAAATGCACCTCACGTTCTTTTTCTTCTGCACCACTGCAGTGTTCTCCAGCATCTTTGCGAGAAATGGAGCTCCAGGAGATTGTTGCCTCAGAATAAGTCCTAATCAAGTCAGTGTGACAAGCATTGTGAGCTACTGGCAGCAGGATGAAGGGCTTTGTCCAATCACAGCAATTGCATTCACCCTTGAAAATGGGAAAGTCCTCTGCTCTGATCCTGTCTCCCCCTGGACAAAAAAGGCAATGCGGAAGGTCGACGAGGAAGCGGAACAGAAGCGAAACCACAGACATGGACAGGCACCGGATGCTCCACAGAATGGCACAGAGGGTTTACTGACTTCGACCATGTTGCCTTTGACCAGTAGATGGCCTCAAGTGCCTGCAAGTGTAGCCATGTGGCCCACTAAAGTAAAATCTTCTAAACCACAGCGAGGGTCTAAGAAGCGAATTGTagtaattaagaaaaaaaggaagaatagGAAGAAAGGAGGGAAGGGGAAAAGAAAGATTACCAAGCCA
>XM_034303856.1
GATCCCATCTTGTATGATGTAAAGCCTTatctgtacaagtccctgtgagtgagTTGTTACTCGGTAATTGCTCAAGAATCCAAAATAATCTTCACGCCAAAGTCTGGCAATCAATTTTCTATTCATGGTAAACTGTTGACTTCTCAAGATGAGTCTTTGCCCTGACTACCACTCAGTTGGTCTCCATCCTTGTGGTTAGGAAAAGAGAACAGCTCACCATGACCTAGAAAACCAGGAAACCAAATGTATCATGAAGGCGCTGATATCAGAGAGTTTCGAGTGACTTTACACCTACAGATTGATGATATCAATAAATTTCGAAGGTGGTGCAGCAGCAATAGGGCGTTTGCTTCTTATTTGCTCCTGCGAGTTTAAACTGGCAGCTCGTCATGAGATATTCATACCACTGAAGATACCCTGAGCTGGCACGATGAAGATGGTCCTCGCACTCCACTTCTCAGCTGCCGTGCTTCTGCTACTGTTGCTCGCTGAGCCTCCAAAGCAAGGTGCTGAAGCCTTTCCAGTGACTTGTTGTCTGAAAACTTGTGACATCAAAGTACGAAGAGATCAGCTCAAAAACTACACCATACAAGAAAAACCCTTATGTCCTGTGAAGGCTGTGAGatTCGTCACAAAGACGAACGTCACGTTCTGCTTGGACCCCTCGTCACCTTGGGCCATTAATACCATGGCCTTTTTGGACAACAGAGGCAGACGTTTTGATGGAAAGATGTACGCTAATGGAGGTCCCTCCCCCAACAATAAGACCAAGTGCACTCAGACCCGAACGTCTCAGAAGACGGCGAAAATGCACCTCACGTTCTTTTTCTTCTGCACCACTGCAGTGTTCTCCAGCATCTTTGCGAGAAATGGAGCTCCAGGAGATTGTTGCCTCAGAATAAGTCCTAATCAAGTCAGTGTGACAAGCATTGTGAGCTACTGGCAGCAGGATGAAGGGCTTTGTCCAATCACAGCAATTGCATTCACCCTTGAAAATGGGAAAGTCCTCTGCTCTGATCCTGTCTCCCCCTGGACAAAAAAGGCAATGCGGAAGGTCGACGAGGAAGCGGAACAGAAGCGAAACCACAGACATGGACAGGCACCGGATGCTCCACAGAATGGCACAGAGGGTTTACTGACTTCGACCATGTTGCCTTTGACCAGTAGATGGCCTCAAGTGCCTGCAAGTGTAGCCATGTGGCCCACTAAAGTAAAATCTTCTAAACCACAGCGAGGGTCTAAGAAGCGAATTGTagtaattaagaaaaaaaggaagaatagGAAGAAAGGAGGGAAGGGGAAAAGAAAGATTACCAAGCCACCAGTGTTCAATCACACTTCTTCTTTTACTACGTCTTCTTATAAATAAGCGCTAAtaaccatgttttcatgtaCAAATGCTATGAACTTGGGCTTAAATGCTTTTCTTTGCTATACACGTTGACTATATGACTAAAGGTGAA

Function

NR:

description
CC chemokine SCYA116

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87613 False 596 TUCP 0.48 3 30741669 30743826
XM_034303856.1 True 1463 mRNA 0.45 6 30741527 30750968

Neighbor

gene id symbol gene type direction distance location
LOC113540512 NA coding downstream 16870 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 40482 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 518207 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 656666 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 684807 30050560 ~ 30056720 (-)
carmil3 carmil3,LOC108268291 coding upstream 539853 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 602934 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 609679 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 628505 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 777402 31528370 ~ 31533258 (-)
G73834 NA non-coding downstream 263293 30477403 ~ 30478234 (-)
G73684 NA non-coding downstream 543951 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 550406 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 602655 30128728 ~ 30138872 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding downstream 638657 30101440 ~ 30102870 (-)
G73977 NA non-coding upstream 19129 30770097 ~ 30771174 (-)
G73974 NA non-coding upstream 26791 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding upstream 85384 30836352 ~ 30838110 (-)
G74047 NA non-coding upstream 279421 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 305517 31056485 ~ 31116436 (-)
G73619 blvra other downstream 719002 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1010670 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1165800 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 1569606 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1856562 28873578 ~ 28884965 (-)
ccl20l LOC100304631 other upstream 22481 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 496092 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1119550 31870518 ~ 31871874 (-)
G74547 NA other upstream 1123341 31874309 ~ 31874827 (-)
G74550 NA other upstream 1129066 31880034 ~ 31880556 (-)

Expression


Co-expression Network