G73944


Basic Information

Item Value
gene id G73944
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30746131 ~ 30767132 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87615
GCTGCTTTGAGTACTTCAGAACGTGcggatctcctgggatttttccACACAACCATCTCTAACCATCTCTAAACACCTTGCAAAATGAGACAGGAAGGCTACATTAACTCAAGCAATCATGctttacatccgtgAGCTCATGAAGAACCACAACACTCGCACCTTCGTTCAGCTCTGCTTTAGTAACACACACGAGGAAAGCTGAGAAACAACTGCAACATGCCTTTCAGCCAGAAGATGAGAAGTCTCCTTGTGATCGCCTTCTTCGCCTGTATTGCTATTACAGTAGCAACTGAGAAAGAGTCCGTGTGCTGCAAGGAAGTTTCCTCCAAAAAAATCACCGTGCCCATAACAGGATTCAAAATTCAGCCATCAAGACCTCCGTGTGTCAAAGCAGTCATCTTTTACACCGCCGAAGGTGCCGTATGCAGCCACTGGAGAGAGGACTGGGTCAAGAACAAGGTCACACAGCTCAGGAGACTTCAGGCCAAAGAAAAAAGCCTGACGATGAGCACTTCGACATTCACACCCCGGACAGCTGGCTCCACTTTAAACAATTAAAGtgcatgaaatatttatttttttttaaaattgatccATTTGGGAGAACCTGATatatttatttgccttttttccGTTTTCGttcaaatataatttttttttttttccccaatgtaTTCAGTTGTAACTTCggttaattaaattataaagcaaatgtttacataatttatttatagtgtTTAATTTATCAAATTGGAAGAATGTGTcttctcacaacacacacacacacacacacacacacacacacacacacacgctgcctcACTCTCCGTCACCATACATATAGAGACTATCATTCATAGAAACTTTGTGAAGTATAGCTCTGTGTTTGAGACTGTTTATTCTCGGAATCATCTTTACTGGTTTTGACTGTAACTTTGCCTCTTTGCCGACTCTCTGACAtcctgtttgctgatcgcctgacttCTGCCTGTCCCTGGTTTTTGATTATTGCTCTTTGTTTTTGGATCCGTTTCAGTTATCTTTACAAGACAACATACAT
>TU87616
GCTGCTTTGAGTACTTCAGAACGTGcggatctcctgggatttttccACACAACCATCTCTAACCATCTCTAAACACCTTGCAAAATGAGACAGGAAGGCTACATTAACTCAAGCAATCATGctttacatccgtgAGCTCATGAAGAACCACAACACTCGCACCTTCGTTCAGCTCTGCTTTAGTAACACACACGAGGAAAGCTGAGAAACAACTGCAACATGCCTTTCAGCCAGAAGATGAGAAGTCTCCTTGTGATCGCCTTCTTCGCCTGTATTGCTATTACAGTAGCAACTGAGAAAGAGTCCGTGTGCTGCAAGGAAGTTTCCTCCAAAAAAATCACCGTGCCCATAACAGGATTCAAAATTCAGCCATCAAGACCTCCGTGTGTCAAAGCAGTCATCTTTTACACCGCCGAAGGTGCCGTATGCAGCCACTGGAGAGAGGACTGGGTCAAGAACAAGGTCACACAGCTCAGGAGACTTCAGGCCAAAGAAAAAAGCCTGACGATGAGCACTTCGACATTCACACCCCGGACAGCTGGCTCCACTTTAAACAATTAAAGtgcatgaaatatttatttttttttaaaattgatccATTTGGGAGAACCTGATatatttatttgccttttttccGTTTTCGttcaaatataatttttttttttttccccaatgtaTTCAGTTGTAACTTCggttaattaaattataaagcaaatgtttacataatttatttatagtgtTTAATTTATCAAATTGGAAGAATGTGTcttctcacaacacacacacacacacacacgctgcctcACTCTCCGTCACCATACATATAGAGACTATCATTCATAGAAACTTTGTGAAGTATAGCTCTGTGTTTGAGACTGTTTATTCTCGGAATCATCTTTACTGGTTTTGACTGTAACTTTGCCTCTTTGCCGACTCTCTGACAtcctgtttgctgatcgcctgacttCTGCCTGTCCCTGGTTTTTGATTATTGCTCTTTGTTTTTGGATCCGTTTCAGTTATCTTTACAAGACAACATACAT

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU87615 True 1063 TUCP 0.41 5 30746131 30767132
TU87616 False 1043 TUCP 0.41 6 30746131 30767132

Neighbor

gene id symbol gene type direction distance location
hs6st1a hs6st1a,hs6st1b,LOC108267822,LOC107727332,LOC107748934,LOC107678693,LOC107588870 coding upstream 298499 30338870 ~ 30447632 (+)
otomp otomp,LOC108267868,LOC108428860,LOC107602611,LOC107690301 coding upstream 509091 30225043 ~ 30237040 (+)
d2hgdh d2hgdh coding upstream 534156 30205198 ~ 30211975 (+)
znf622 znf622,LOC107721690 coding upstream 542121 30199694 ~ 30204010 (+)
zgc:110158 zgc:110158,LOC108267812,LOC108428898,LOC107678694,LOC105906991,LOC107690032 coding upstream 551557 30139003 ~ 30194574 (+)
epha4a epha4,epha4a,LOC108440631,LOC107583108,LOC107668967 coding downstream 14026 30781158 ~ 30845103 (+)
slc25a36a slc25a36,slc25a36a,LOC108440632,LOC107668959,LOC107706334,LOC107694658 coding downstream 238291 31005423 ~ 31028876 (+)
clstn2 clstn2,LOC107668970,LOC107738117 coding downstream 362975 31130107 ~ 31212333 (+)
LOC113540056 LOC108267180 coding downstream 451796 31218928 ~ 31221020 (+)
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding downstream 455155 31222287 ~ 31236901 (+)
G73935 NA non-coding upstream 23329 30721031 ~ 30722802 (+)
G73844 NA non-coding upstream 152522 30593150 ~ 30593609 (+)
G73839 NA non-coding upstream 264506 30481422 ~ 30481625 (+)
G73590 NA non-coding upstream 553797 30150455 ~ 30192334 (+)
G73578 NA non-coding upstream 611266 30134652 ~ 30134865 (+)
G73952 NA non-coding downstream 5470 30772602 ~ 30772886 (+)
G74011 NA non-coding downstream 250979 31018111 ~ 31018474 (+)
G74006 NA non-coding downstream 263256 31030388 ~ 31031370 (+)
G74158 rem2,LOC108268350,LOC108442842 non-coding downstream 479958 31247090 ~ 31250757 (+)
G74199 NA non-coding downstream 588422 31355554 ~ 31356121 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 267838 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1064956 29673514 ~ 29681175 (+)
asip2b NA other upstream 1122334 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 1549982 29181767 ~ 29196149 (+)
G72873 NA other upstream 1834027 28874356 ~ 28912104 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 294598 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 584069 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 992757 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 1191890 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 1193737 31960869 ~ 31965136 (+)

Expression


Co-expression Network