ccl20l (LOC100304631)


Basic Information

Item Value
gene id ccl20l
gene name LOC100304631
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30773449 ~ 30775819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87656
AGTCACCGCACCTTCCTCTGAAAATACCCACAcagtgatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagtggtAGCTTATGGTATGTTATCTCCCTGTTCTGTGATATATATAAGACAGCAGCACAAGCGTGTGTCTCTAGTTCGCTTGCCATTATGTCTCTGAAAGGTTTGGTGACCATCGTCTTCGCTGGATGCTGgcttctgtgcatgttctgtCTGACGACAGACGCATATGGACCGCTGAACCATGCCTGCTGCGTCAAATACACTCGCACGCCAGTGGATTTCAAACTGATCAAAGGTTTCGCAGAGCAGAGTTCCCGCGAGGTGTGCCGCATCGATGCCATCATATTCCTTACAAAGCGTAACAAGAAAGTGTGCGCAAGTGCAGAGGACGAGTGGGTGCGGAACGTCCTAGCACGTCTGAGCactagaatgaaaaaaatgtctcatCAGCAGCAGCTTCCTAACCAGGTCAACCCTACCTTGGCTGGGAATGCCACCCCAAGTGCATGAACGTCTCTTCAAACCACTGTCTTCTTTCTTTAAACCGCAGTATTtcagacttttttgttttagaagtTAAGCGCTCTTTTTAATCCTTGTTATATACTGTCCaaatataatgcaaataatcaacaagCTGATGCAACGAACTCTGTTTTCAAATGATTATACCTATAAAATGTTGACCTTTTTCAAGTTTTTATGCTCTAGCCAGGTTTTGTTGTCTTTAACATCTGTAAAAAATAGATACTTGACATTATGTCattaaattacagaataaaatgaatatctgAGACAATTATGtttggtgtaatataatcatgttacatatacagtatattgtccTTTAATCCACTGACTGTATCTTGAACCAAATCCAATGCCTTCACAATAAAAACT
>XM_026937106.2
TGTGATATATATAAGACAGCAGCACAAGCGTGTGTCTCTAGTTCGCTTGCCATTATGTCTCTGAAAGGTTTGGTGACCATCGTCTTCGCTGGATGCTGgcttctgtgcatgttctgtCTGACGACAGACGCATATGGACCGCTGAACCATGCCTGCTGCGTCAAATACACTCGCACGCCAGTGGATTTCAAACTGATCAAAGGTTTCGCAGAGCAGAGTTCCCGCGAGGTGTGCCGCATCGATGCCATCATATTCCTTACAAAGCGTAACAAGAAAGTGTGCGCAAGTGCAGAGGACGAGTGGGTGCGGAACGTCCTAGCACGTCTGAGCactagaatgaaaaaaatgtctcatCAGCAGCAGCTTCCTAACCAGGTCAACCCTACCTTGGCTGGGAATGCCACCCCAAGTGCATGAACGTCTCTTCAAACCACTGTCTTCTTTCTTTAAACCGCAGTATTtcagacttttttgttttagaagtTAAGCGCTCTTTTTAATCCTTGTTATATACTGTCCaaatataatgcaaataatcaacaagCTGATGCAACGAACTCTGTTTTCAAATGATTATACCTATAAAATGTTGACCTTTTTCAAGTTTTTATGCTCTAGCCAGGTTTTGTTGTCTTTAACATCTGTAAAAAATAGATACTTGACATTATGTCattaaattacagaataaaatgaatatctgAGACAATTATGtttggtgtaatataatcatgttacatatacagtatattgtccTTTAATCCACTGACTGTATCTTGAACCAAATCCAATGCCTTCACAATAAAAACTGATGAAGTCAGATG

Function

NR:

description
PREDICTED: CC chemokine SCYA112 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87656 True 924 TUCP 0.42 4 30773463 30775819
XM_026937106.2 False 821 mRNA 0.41 4 30773449 30775702

Neighbor

gene id symbol gene type direction distance location
LOC113540512 NA coding downstream 48792 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 72404 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 550129 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 688588 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 716729 30050560 ~ 30056720 (-)
carmil3 carmil3,LOC108268291 coding upstream 515002 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 578083 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 584828 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 603654 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 752551 31528370 ~ 31533258 (-)
G73977 NA non-coding downstream 2275 30770097 ~ 30771174 (-)
G73834 NA non-coding downstream 295215 30477403 ~ 30478234 (-)
G73684 NA non-coding downstream 575873 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 582328 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 634577 30128728 ~ 30138872 (-)
G73974 NA non-coding upstream 1940 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding upstream 60533 30836352 ~ 30838110 (-)
G74047 NA non-coding upstream 254570 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 280666 31056485 ~ 31116436 (-)
G74255 NA non-coding upstream 449415 31225234 ~ 31226588 (-)
LOC113540055 LOC108268301 other downstream 22481 30741527 ~ 30750968 (-)
G73619 blvra other downstream 750924 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1042592 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1197722 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 1601528 29148638 ~ 29171921 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 471241 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1094699 31870518 ~ 31871874 (-)
G74547 NA other upstream 1098490 31874309 ~ 31874827 (-)
G74550 NA other upstream 1104215 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 1107124 31882943 ~ 31883607 (-)

Expression


Co-expression Network