spsb4a (spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109)


Basic Information

Item Value
gene id spsb4a
gene name spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31061730 ~ 31097929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87706
ctctgtctctgtctctctctctctctctctctctctcctgtccctTCACTCCCTGTCTCTACTTGACAAGAACAGAAGATTGCTTTTCACCATGAGGCAGCTCTTGTGCTGCTGCTTCCTACAACGTCTACCTTTCTtcgttctccctctctctgcccCGTCCTCTTTCCCTTCATCCATGGGCTGATTGAACAAGAGGAGTTTCCGAGCTTGAACGGGACAGATTAGCCCCAAGGAGGGGGTTGCAGAAGAACAGAAGGGGGGTGACATCTCAGGGGAGACGCTTCTTTTCTCTTGCCTCAGCAGGgcagggagaaagaaagacaagaaaggGAGAGGCAGCGTGCTCTTTTCAATGCAGAGgagcttttttctttccttgggTTTCCTTTTATTCGCCCTGCTTTGTTTCTTCATTCCCCGTTGTCCCGAGTGCGGGGACAAAAGTGAACTACGGCGGACAGGACTTGCACAACAGGCTTGTGTGAAGCTAGCATTTGCTGACCAGATTCAGTGGACACCATCCTGACACTTTGACGCTTTGATGAGGTAACAGTCAACCAATTTGCCCAACATCCCACTGAGGAACCATGGGCCAGAAGATTTCAGGAAGCATCAAGTCGGTGGACGTGAGAGGCGAGCCATCCTACCGCCCCTTACGGAGAGAACTCCGAGGTCCAGATTTCTTCAAGCCAGCCAGGCTCGACCTGCTGCTGGATATGCCAGCAGTGTCCTCCGAGCATCAGCTGCAGCATGCATGGAACCCAGATGATCGCTCTCTCAATATCTTCATCAAGGAAGATGACAAGCTGACTTTCCACCGCCACCCGGTGGCCCAGAGCACGGATTGCATCCGAGGGCGAGTGGGCTATACGCGTGGCCTTCACGTTTGGCGCATCCATTGGCCCGCCCGGCAGCGGGTACCCATGCCGTAGTGGGTGTGGCCACATCAGAGGCTCCTCTCCATTCGGTGGGATACACCTCTCTGGTAGGTAGTGACAGTGATTCCTGGGGCTGGGACCTGGGCCGCAACAAGCTCTACCACAACAGCAAAAACCAACCAGCTTCATCGGCACCCACCTACCCCAGCTTCCTGGAGCCTGAGGAAGCCTTTGTGCTCCCTGACACCctggtggtggtgctggatATGGACGAGGGGACACTTAGTTTCATGGTGGATGGACAGTACCTTGGAGTGGCCTTCAGGGGGCTCAAGGGAAAGAAGCTGTATCCCATCGTTAGTGCAGTATGGGGACACTGTGAGATCACCATGCGCTACATCAATGGCTTGGATCCTGAGCCCCTGCCTCTGATGGACCTGTGCAGGAGAGCAGCGCGTCTAGCTCTGGGCCGTGACCGACTGCAGCAGATCGAGACCTTGCCTTTACCCCAATCTCTAAAAAATTACCTCCAATACCAATGATGTGGACGGATCCAGCAACACACAGATTCACAAAGCGCAAGCCTCGAGGTGCGGCGACTCTAGCGCCAACAACAGGGCGAATGTTTACACTACAACACACTCTGTGGCTCCTACCAGAGATGTTCTGTTCCTTCcaccatttctctttttttaacgTTTTAACTTTTTGGATGGTATGTTGAGATGGACTGTGAGGTTGGAGTGTAAGGATGCCACAGCGCCCTCCACTGGTAGTCTCTCCCTGAATGTTAGGGCttggcataaaaataaaaaaaatgctacacaaCCTTGGGAATGCTCGTTCGAGGCTCGCAGCGATGCTTAAACATTCCAGAAGGAAACCAAGCACCTTAGAGGCCAGActctggagctggagctggagcggTATCCGGTTTCTAGCAGGTCTTTCCTGTGCACAAGGGCGACCGCTACCTACATCAAGACCCGATTCATGAGACTCGTCAAGAAGTGCACtaatacagcacaaacactccAAGCaaacatttttcccccaaatctAATTTGAGTCACTTTTCTATTCCTGAGTGTGTACCTTAATTGTTAAGGtgagtgtgatttttttcccccccaaggTTGATTTTATGACTATTATGATACAGATCCTGTAACAAGTTTAGtgctatgttttattttatttatctggaTGTAATTCCTTTTTATTGAATATGAGATTGTGCATACTAGCACATGGACATGATAAATCCATCCCAAATGGCTTTTTATTTGAAACCAGGATGCtgctttttttctattattattattattattattaatatgattattattattattgatgctGGTTTGTCTGCCTGATCAAACTGGAGATCTGCAGTAAACAGTGGAATGTAAGGACACCGCTAAACAt
>XM_026936134.2
tctgtctctctctctctctctctctctctcctgtccctTCACTCCCTGTCTCTACTTGACAAGAACAGAAGATTGCTTTTCACCATGAGGCAGCTCTTGTGCTGCTGCTTCCTACAACGTCTACCTTTCTtcgttctccctctctctgcccCGTCCTCTTTCCCTTCATCCATGGGCTGATTGAACAAGAGGAGTTTCCGAGCTTGAACGGGACAGATTAGCCCCAAGGAGGGGGTTGCAGAAGAACAGAAGGGGGGTGACATCTCAGGGGAGACGCTTCTTTTCTCTTGCCTCAGCAGGgcagggagaaagaaagacaagaaaggGAGAGGCAGCGTGCTCTTTTCAATGCAGAGgagcttttttctttccttgggTTTCCTTTTATTCGCCCTGCTTTGTTTCTTCATTCCCCGTTGTCCCGAGTGCGGGGACAAAAGTGAACTACGGCGGACAGGACTTGCACAACAGTAAgcattgtGGCTTGTGTGAAGCTAGCATTTGCTGACCAGATTCAGTGGACACCATCCTGACACTTTGACGCTTTGATGAGGTAACAGTCAACCAATTTGCCCAACATCCCACTGAGGAACCATGGGCCAGAAGATTTCAGGAAGCATCAAGTCGGTGGACGTGAGAGGCGAGCCATCCTACCGCCCCTTACGGAGAGAACTCCGAGGTCCAGATTTCTTCAAGCCAGCCAGGCTCGACCTGCTGCTGGATATGCCAGCAGTGTCCTCCGAGCATCAGCTGCAGCATGCATGGAACCCAGATGATCGCTCTCTCAATATCTTCATCAAGGAAGATGACAAGCTGACTTTCCACCGCCACCCGGTGGCCCAGAGCACGGATTGCATCCGAGGGCGAGTGGGCTATACGCGTGGCCTTCACGTTTGGCGCATCCATTGGCCCGCCCGGCCGGGTACCCATGCCGTAGTGGGTGTGGCCACATCAGAGGCTCCTCTCCATTCGGTGGGATACACCTCTCTGGTAGGTAGTGACAGTGATTCCTGGGGCTGGGACCTGGGCCGCAACAAGCTCTACCACAACAGCAAAAACCAACCAGCTTCATCGGCACCCACCTACCCCAGCTTCCTGGAGCCTGAGGAAGCCTTTGTGCTCCCTGACACCctggtggtggtgctggatATGGACGAGGGGACACTTAGTTTCATGGTGGATGGACAGTACCTTGGAGTGGCCTTCAGGGGGCTCAAGGGAAAGAAGCTGTATCCCATCGTTAGTGCAGTATGGGGACACTGTGAGATCACCATGCGCTACATCAATGGCTTGGATCCTGAGCCCCTGCCTCTGATGGACCTGTGCAGGAGAGCAGCGCGTCTAGCTCTGGGCCGTGACCGACTGCAGCAGATCGAGACCTTGCCTTTACCCCAATCTCTAAAAAATTACCTCCAATACCAATGATGTGGACGGATCCAGCAACACACAGATTCACAAAGCGCAAGCCTCGAGGTGCGGCGACTCTAGCGCCAACAACAGGGCGAATGTTTACACTACAACACACTCTGTGGCTCCTACCAGAGATGTTCTGTTCCTTCcaccatttctctttttttaacgTTTTAACTTTTTGGATGGTATGTTGAGATGGACTGTGAGGTTGGAGTGTAAGGATGCCACAGCGCCCTCCACTGGTAGTCTCTCCCTGAATGTTAGGGCttggcataaaaataaaaaaaatgctacacaaCCTTGGGAATGCTCGTTCGAGGCTCGCAGCGATGCTTAAACATTCCAGAAGGAAACCAAGCACCTTAGAGGCCAGActctggagctggagctggagcggTATCCGGTTTCTAGCAGGTCTTTCCTGTGCACAAGGGCGACCGCTACCTACATCAAGACCCGATTCATGAGACTCGTCAAGAAGTGCACtaatacagcacaaacactccAAGCaaacatttttcccccaaatctAATTTGAGTCACTTTTCTATTCCTGAGTGTGTACCTTAATTGTTAAGGtgagtgtgatttttttcccccccaaggTTGATTTTATGACTATTATGATACAGATCCTGTAACAAGTTTAGtgctatgttttattttatttatctggaTGTAATTCCTTTTTATTGAATATGAGATTGTGCATACTAGCACATGGACATGATAAATCCATCCCAAATGGCTTTTTATTTGAAACCAGGATGCtgctttttttctattattattattattattattaatatgattattattattattgatgctGGTTTGTCTGCCTGATCAAACTGGAGATCTGCAGTAAACAGTGGAATGTAAGGACACCGCTAAACAttagtatatttaaaatgtgaataaaatccaAGTGAATGAGAA

Function

symbol description
spsb4a Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; head; and reproductive system. Orthologous to human SPSB4 (splA/ryanodine receptor domain and SOCS box containing 4).

NR:

description
PREDICTED: SPRY domain-containing SOCS box protein 4-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU87706 False 2309 TUCP 0.49 3 31061730 31097888
XM_026936134.2 True 2352 mRNA 0.49 4 31061737 31097929

Neighbor

gene id symbol gene type direction distance location
slc25a36a slc25a36,slc25a36a,LOC108440632,LOC107668959,LOC107706334,LOC107694658 coding upstream 32854 31005423 ~ 31028876 (+)
epha4a epha4,epha4a,LOC108440631,LOC107583108,LOC107668967 coding upstream 216627 30781158 ~ 30845103 (+)
hs6st1a hs6st1a,hs6st1b,LOC108267822,LOC107727332,LOC107748934,LOC107678693,LOC107588870 coding upstream 614098 30338870 ~ 30447632 (+)
otomp otomp,LOC108267868,LOC108428860,LOC107602611,LOC107690301 coding upstream 824690 30225043 ~ 30237040 (+)
d2hgdh d2hgdh coding upstream 849755 30205198 ~ 30211975 (+)
clstn2 clstn2,LOC107668970,LOC107738117 coding downstream 32178 31130107 ~ 31212333 (+)
LOC113540056 LOC108267180 coding downstream 120999 31218928 ~ 31221020 (+)
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding downstream 124358 31222287 ~ 31236901 (+)
si:ch211-119o8.6 LOC108268351 coding downstream 141639 31239568 ~ 31244079 (+)
prmt5 prmt5,LOC107694666,LOC107668985,LOC107558089 coding downstream 450351 31548280 ~ 31560707 (+)
G74006 NA non-coding upstream 30360 31030388 ~ 31031370 (+)
G74011 NA non-coding upstream 43256 31018111 ~ 31018474 (+)
G73952 NA non-coding upstream 288844 30772602 ~ 30772886 (+)
G73935 NA non-coding upstream 338928 30721031 ~ 30722802 (+)
G73844 NA non-coding upstream 468121 30593150 ~ 30593609 (+)
G74158 rem2,LOC108268350,LOC108442842 non-coding downstream 149161 31247090 ~ 31250757 (+)
G74199 NA non-coding downstream 257625 31355554 ~ 31356121 (+)
LOC117597166 NA non-coding downstream 426174 31524103 ~ 31531196 (+)
G74315 NA non-coding downstream 429927 31527856 ~ 31528070 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding downstream 433524 31531453 ~ 31533223 (+)
G73944 NA other upstream 294598 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 583437 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1380555 29673514 ~ 29681175 (+)
asip2b NA other upstream 1437933 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 1865581 29181767 ~ 29196149 (+)
c4h22orf39 c7h22orf39 other downstream 253272 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 661960 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 861093 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 862940 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 869270 31967199 ~ 31967957 (+)

Expression


Co-expression Network