G74256


Basic Information

Item Value
gene id G74256
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31236413 ~ 31310909 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87966
taaaggaaaaaaaaaaaaaaaaagcaagtgaaGAAAAAGGAATAAACAAGAAGATCCTGCATTTAGTACAAAACTCTGACTTGACAAAGATTTCTCCATATTTTTCCCGACACACAGCTTGTCCCCAAAAGATATCCCTCTCAGTCCACATCACCCTTCCATATCCTGACTTCTGGGAGACTTTCTGATTAACGACAGgacaacaaatacaaaaaaaggcttggtcttttaaataaaactgaacgTCTCGCTATGAGATCAGTCGTCTAAGAAGTCGTCGTCCAGGTTGACGTCTGTAGTGTCGATGTCGTCCAGCTCCAGGTTGTCCAGGTcgtcctccagctcctccagagTCTATGAACAAACGCCAAAGCAGAAATTTTAATACTCTAAAAtactctaaaaaaaa
>TU87968
AAGAAAAAAAgcaaaaaaaaaagcaagtgaaGAAAAAGGAATAAACAAGAAGATCCTGCATTTAGTACAAAACTCTGACTTGACAAAGATTTCTCCATATTTTTCCCGACACACAGCTTGTCCCCAAAAGATATCCCTCTCAGTCCACATCACCCTTCCATATCCTGACTTCTGGGAGACTTTCTGATTAACGACAGgacaacaaatacaaaaaaaggcttggtcttttaaataaaactgaacgTCTCGCTATGAGATCAGTCGTCTAAGAAGTCGTCGTCCAGGTTGACGTCTGTAGTGTCGATGTCGTCCAGCTCCAGGTTGTCCAGGTcgtcctccagctcctccagagTCTATGAACAAACGCCAAAGCAGAAATTTTAATACTCTAAAAtactctaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87966 True 409 lncRNA 0.40 2 31236413 31275474
TU87968 False 408 lncRNA 0.40 2 31236413 31310909

Neighbor

gene id symbol gene type direction distance location
LOC113540512 NA coding downstream 511756 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 535368 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 1013093 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 1151552 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 1179693 30050560 ~ 30056720 (-)
LOC113540523 LOC108267123 coding upstream 42993 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 49738 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 68564 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 217461 31528370 ~ 31533258 (-)
LOC113540064 NA coding upstream 227630 31538539 ~ 31544634 (-)
G74255 NA non-coding downstream 9825 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 119977 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 205033 31030389 ~ 31031380 (-)
G73974 NA non-coding downstream 390931 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding downstream 398303 30836352 ~ 30838110 (-)
G74417 NA non-coding upstream 256142 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 425383 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 433442 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 442212 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 556173 31867082 ~ 31870008 (-)
ccl20l LOC100304631 other downstream 460594 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 485445 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1213888 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1505556 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1660686 29564221 ~ 29575727 (-)
LOC117597010 NA other upstream 559609 31870518 ~ 31871874 (-)
G74547 NA other upstream 563400 31874309 ~ 31874827 (-)
G74550 NA other upstream 569125 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 572034 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 594717 31905626 ~ 31910974 (-)

Expression


Co-expression Network