LOC113540254


Basic Information

Item Value
gene id LOC113540254
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31778121 ~ 31847866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88126
GCAACTTTGTGTGACTCGTGGTGCTGACAAGATAATTTTTGGAAAAGGGATTAAACTGCTTGTTGAAGTCGGTAAGTTAATTGCCTTTAAATGTTGATTGATCACAGCTGTGTCTGTTTCAGTTCCTACCATTAGAAGACAAAAGTCTCCGTTTCTGACATTGCAAATTTCATGCAAATCTTTTCTTGGCGTTTTATAGATTAAGGCATTAAGCCAAAATGAAAGCTATACATTAGTTTTGCTCAGTGTAAAACCAGGACAAAGACAACATAAAGATATTAGTTAAGTGCAGTGGAAAGTTAATGAAATGacacatttcactgtgtggATGCTGGGGCTGGAAATAAACTGATCTTTGGACATGGAACAAAGCTAACAATAACTTCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88131
GGCTTAATGAAATCTATTTCGGCTCTGGAATCAAACTGATTGTTGAAACAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88141
AGCTCTGGAATCAAACTTATCGTTGAAACAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA
>TU88144
ATTCTGGAAGTGACAAAATCTACTTTGGCTCTGGAACAAAACTGTTTGTAGAAAAAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88145
ATACTGGAGGAATTCAAAAGTTAATCTTTGGATCAGCCACAAAATTGATAATTAATTCCCaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88148
ctgATGGTTATGGAGGAAAATTGACCTTTGGCAAAGGCATAAATCTGCTGGTGCAGTCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA
>TU88150
cttATACTGCTGGAAAACTGACCTTTGGCAAAGGAATAAAACTGCTGGTTCAGTCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88153
TAACGTATGTTCATTTGTAGAAAGTGGGGCAGTGGAGCAGATCTTCATCAAAGTGGCTGCTGCACATCAGTATCTCTCATCTGACGTTTTGTCTGAGCTGTGCGTTTAACTGAGTGGTATTATGTGGTGCAGATTTGTctcaaaaatgaatttatttacaaatttaactGCTTTTTACGTACCATTTAGGAGATTCATCATATAGAAATCATCAGGCATCCGGTTACAAGTGCAACCATAAAAACTCAGGATCTATTTTGGAGCTGGAACAAAGCTGGTTGTTCAGTCTAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATA
>TU88158
TTTGGTGGGAGTGGTAAACTCATCTTTGGTCACGGAATCAGGCTTTTCATTGAAAAAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA
>TU88163
TGGATGCTGGTGGAAGAAATAAACTGATCTTTGGACATGGAATAAAGCTAACAGTAACATCAAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA
>TU88168
CTTTGGGGCTGGAACACGACTCATAGTTGAATCAGaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGATAACTGTGGTACTAAGGCACCTGAAGTGGACAATTTCAAATCAGATGCCAAGACCAACTTCTTCGCACTGAGCATCTTTTGGATAAGGGTCCTGCTCTTGAAGGCCATTGCGTTCAATATCTTGATGACGGCGAAAGTCTGGTTGAGTTAGTGCTTTTTGAATTTGGTGATACAATCCCAGATTGGAAGCCCTGGATGAAttttgtgctgtctgtgtgaagAAAGAGGAATGTTCTGCTCAACATGACAACATGGTTGTTGAAATGCAATGTAATATAGGtcttatttgttcatttaagaAATagctctttcctttttttgtgataaaaaaatacttactattcaattcaattcaattttatttacatactttttaattcacgcttttaacaatagacattttcACAATGTAATACTCAAATCTAGCTATGATTACTTTTGACTGCTTGTTCAGAATCTGAATTCTACTTTCACTTACCTGCACTTattaggtctgttttttttctgtttattattatttttactcactGCTATTAATCCTGtcttatcatttatcatttatattccCATATTGGCTGAATCTGCATCGGTATCTCTTTATAAACATTAACAGAATATGTGTATGACTTAAAGTTGAAGTTGCTAAGATATGTGCACATGCATATACTATGTACATGGCTTTATATGTATAGATCattgttcatttatatttagGTATTGTCTTTTGCACatcaaaataaatgataagTACATGAAATAATCACTA
>XR_004578058.1
GTGTGGCTATagatttagatagatagatagatttagaTATAGAGAACACTTTCTTGTTAGTCCACCTTGTAGGTGTGTAGTTTGTGCGCATTTGTCTTAGTCGTTCTCTAGCTCAGTTTCTGACCTCATCACTACAGTAAACGTTTTGGATGTGGATTGTTTCTTAACCCAGAAGTGTTATTGTGGAGTTTAAAATTCCATCAGCTGTACCTGATCTGATCACTGCTGTCTGATTTACATCTACAATGAGTAACTGTACACGTCCAAAGTGCTCCTTTTATCAGATACACCTATATGGGccctttgattatcagcatcacctgagGAGATTCATCATATAGAAATCATCAGGCATCCGGTTACAAGTGCAACCATAAAAACTCAGTGTTTTATGTATTGCTGTGTGACACTGTGGACTTCTGGCTCTGGCTACAGGATCTATTTTGGAGCTGGAACAAAGCTGGTTGTTCAGTCTAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGGTGAGAATTTATAGACAACACGTACACTAGCCAAAATTGCACTGATTTCAGAGTTTTAGTATGACTGTAccagaatattactgtacaAATATTTTGGATTGCTTACATCATTTTGCccacattaa
>XR_004578059.1
GGCAGTGTGGCTATagatttagatagatagatagatttagaTATAGAGAACACTTTCTTGTTAGTCCACCTTGTAGGTGTGTAGTTTGTGCGCATTTGTCTTAGTCGTTCTCTAGCTCAGTTTCTGACCTCATCACTACAGTAAACGTTTTGGATGTGGATTGTTTCTTAACCCAGAAGTGTTATTGTGGAGTTTAAAATTCCATCAGCTGTACCTGATCTGATCACTGCTGTCTGATTTACATCTACAATGAGTAACTGTACACGTCCAAAGTGCTCCTTTTATCAGATACACCTATATGGGccctttgattatcagcatcacctgagGAGATTCATCATATAGAAATCATCAGGCATCCGGTTACAAGTGCAACCATAAAAACTCAGTGACAGTGTTTTATGTATTGCTGTGTGACACTGTGGACTTCTGGCTCTGGCTACAGGATCTATTTTGGAGCTGGAACAAAGCTGGTTGTTCAGTCTAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGGTGAGAATTTATAGACAACACGTACACTAGCCAAAATTGCACTGATTTCAGAGTTTTAGTATGACTGTAccagaatattactgtacaAATATTTTGGATTGCTTACATCATTTTGCccacattaa
>XR_004578060.1
TAACGTATGTTCATTTGTAGAAAGTGGGGCAGTGGAGCAGATCTTCATCAAAGTGGCTGCTGCACATCAGTATCTCTCATCTGACGTTTTGTCTGAGCTGAGATTCATCATATAGAAATCATCAGGCATCCGGTTACAAGTGCAACCATAAAAACTCAGTGTTTTATGTATTGCTGTGTGACACTGTGGACTTCTGGCTCTGGCTACAGGATCTATTTTGGAGCTGGAACAAAGCTGGTTGTTCAGTCTAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGGTGAGAATTTATAGACAACACGTACACTAGCCAAAATTGCACTGATTTCAGAGTTTTAGTATGACTGTAccagaatattactgtacaAATATTTTGGATTGCTTACATCATTTTGCccacattaa
>XR_004578061.1
TAACGTATGTTCATTTGTAGAAAGTGGGGCAGTGGAGCAGATCTTCATCAAAGTGGCTGCTGCACATCAGTATCTCTCATCTGACGTTTTGTCTGAGCTGAGATTCATCATATAGAAATCATCAGGCATCCGGTTACAAGTGCAACCATAAAAACTCAGTGACAGTGTTTTATGTATTGCTGTGTGACACTGTGGACTTCTGGCTCTGGCTACAGGATCTATTTTGGAGCTGGAACAAAGCTGGTTGTTCAGTCTAaagTAAAACGGGACCCGGAGTATTACATAGTTAAGCCACAGAATAGTGGCAGTGAAGAAAAAGAATCCTGCCTCGCCACTGGCTTTACAGTTCAAAATATCACCGATACAATTTGGCCACCTGGTGTGAAAGAAGGAGCAGTTCGGTTTACAGGCGAGGCTTATTACAGCAGGCTCATACTGAATGACACCACCGACTGTAATGAAATCGGTGAGAATTTATAGACAACACGTACACTAGCCAAAATTGCACTGATTTCAGAGTTTTAGTATGACTGTAccagaatattactgtacaAATATTTTGGATTGCTTACATCATTTTGCccacattaat

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU88126 True 1249 lncRNA 0.36 5 31788974 31847750
TU88131 False 912 lncRNA 0.36 5 31810595 31847750
TU88141 False 1008 lncRNA 0.35 5 31822525 31847866
TU88144 False 918 lncRNA 0.36 5 31804155 31847750
TU88145 False 921 lncRNA 0.36 5 31794665 31847750
TU88148 False 1037 lncRNA 0.35 5 31806726 31847866
TU88150 False 918 lncRNA 0.36 5 31809876 31847750
TU88153 False 1151 lncRNA 0.37 6 31779400 31847750
TU88158 False 1035 lncRNA 0.35 5 31784640 31847866
TU88163 False 1040 lncRNA 0.35 5 31788732 31847866
TU88168 False 1012 lncRNA 0.35 5 31796806 31847866
XR_004578058.1 False 811 lncRNA 0.40 4 31778125 31846428
XR_004578059.1 False 821 lncRNA 0.40 4 31778121 31846428
XR_004578060.1 False 585 lncRNA 0.42 4 31779400 31846428
XR_004578061.1 False 592 lncRNA 0.42 4 31779400 31846429

Neighbor

gene id symbol gene type direction distance location
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 24454 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 71852 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 93654 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 167924 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 183434 31587261 ~ 31594687 (+)
LOC113540131 NA coding downstream 234053 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 469122 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 488222 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 490445 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 492629 32340495 ~ 32341411 (+)
G74384 NA non-coding upstream 35026 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 70685 31707228 ~ 31707436 (+)
LOC117597165 NA non-coding upstream 231326 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 244898 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 246925 31524103 ~ 31531196 (+)
LOC117597031 NA non-coding downstream 12094 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 98182 31946048 ~ 31946542 (+)
G74573 NA non-coding downstream 359495 32207361 ~ 32207824 (+)
G74578 NA non-coding downstream 436342 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 470566 32318432 ~ 32340074 (+)
LOC113540067 NA other upstream 1323 31759889 ~ 31776798 (+)
c4h22orf39 c7h22orf39 other upstream 424977 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 680192 31061730 ~ 31097929 (+)
G73944 NA other upstream 1010989 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1299828 30454757 ~ 30478293 (+)
LOC117597173 NA other downstream 111156 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 113003 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 119333 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 123068 31970934 ~ 31972279 (+)
LOC117597124 NA other downstream 126474 31974340 ~ 31975068 (+)

Expression


Co-expression Network