G74457


Basic Information

Item Value
gene id G74457
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31753121 ~ 31756304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88242
AGGAATTTCTCAAACTGAGAGCACATTCGGCATGAAAGTGTGTTATGGATACACAATGTTATTTCACTGAAAGGCCACTAGACGGCGCATCATTGATCAAATATACTGTTTTTAGGGATCTTGGAAAGTGCTCGTGAAATTTCATATGCAAGGTGTTTTaaggttaattaattaatcccTAAAGAACCAATAAAGAATCTTTTTCCCCTAAAAGCGCAAATTGTTTTAAAGAATTCTGCAGAATTTCTGAGCATTCCCAAAATTCCCATCTAATCAACGCACTACTCATTTCCCAACATTTTCCAACATTAAATCTGGAAAAGAAATGACAACAAGTGAAGAGGACATTTTTGAACTTTATTGAAGGCATAGCTGACTTCAGCATGTCAAAAGAGGCAGGAACAATAAATGCAGCCCATCTCAGGAGGAGACATCGCCACCTGATCTGACCTCTTGCAAAACCCTCTGAAAGATTTGCTGGATATCTCCTTGACTCCTAAATACACAAAACTTTATTTTCATGCAGACTTCCCAAAGAGATTCTCATAAAAGGTGGACGGGCGTCGTGGTAGCTTTCACTGTTCAGTGGCTGTAAAAAGCTGGTTGTTTCTTTGACATGTACTGGAATGTTAATATTGCCACTGTCAGAAACGGAGGAGAGGAAAAGGGTCTTATTCACATTTAATACGCCGTGATCAGCAGGGCTTCAGGAGCAGAACCCGAGCGCTGTTTATCAAACTCGTATGTCTGGGTGAGAAAAGGGACAAAGAGGGACTGGACTGAAGCCTTATTGTGCTCATAGATCTTTTGATACATTATAAAGTAATTATTTCCTTAAAGTTTAGCTTGTTTTATTATGCcactttaaatcttttaaatacatttgtaaATGCAACGAGAAGCACAATCACACAGCAGATAGAGATATCATTTAAAGTCGTCTTCAATAAAAGTCtctacatgaaaataaaaatgtgctttcCCTTCATACATGACACTGTCATCCTTACAACCTTCCGGCCGAAAAGGCTGGTACAGCataaccagaaaaagaaaagatgctCAACATGTTTAGACATCGAAGCTTATCCAACACGACCTCCGGCCAGAAACTGTCGTTATTAAACAGAGGCACAAACCTAGGCTTTACATCACCAAATTaacacttctttctttttttttttttttttttttctttttttttgtttttttgtccctTAGAGGAAGCAGAGTGGTGATCAGAGAGGGAGTTCCCTCAAAGTCCCCCTCCATGTGACCGGTTCTGCAGCGGCTACATGCTGAGCAGTGCGGTATATCAGGTGCTTTTTATGCCCTCCTTGCCTTAGAGGCGCAGAAAGacaaagatagagagacagagagaaagagagagagaggagaaggcTGCACCTCCCCTGTCGCTCAGACGAGCGGTTGCTTTGGAGCGTGTCGGTTCACGCCGGCCGCCGTCTCCAGCCTCCACACGCAGATTAACGCCGGAAAACAAATTTCCGATTGGAGCTTGTGGTTTTGCACCTCTTCTTTGTCTTCGGTATCATTTTCGCACAAGTGCTTTGCACCCGCTTTGTGTATCTCTTCAGTGCGGCGGGTTCATAGTGCCGTGGCCGCgctgctgcttctgcttctgctgcATGAGGAGCTGCTCCAGCGCAGAAGGGCCTGGCTGCATCATCGAGCTTGACCAGAT
>TU88243
AGGAATTTCTCAAACTGAGAGCACATTCGGCATGAAAGTGTGTTATGGATACACAATGTTATTTCACTGAAAGGCCACTAGACGGCGCATCATTGATCAAATATACTGTTTTTAGGGATCTTGGAAAGTGCTCGTGAAATTTCATATGCAAGGTGTTTTaaggttaattaattaatcccTAAAGAACCAATAAAGAATCTTTTTCCCCTAAAAGCGCAAATTGTTTTAAAGACATCTGCAGAATTTCTGAGCATTCCCAAAATTCCCATCTAATCAACGCACTACTCATTTCCCAACATTTTCCAACATTAAATCTGGAAAAGAAATGACAACAAGTGAAGAGGACATTTTTGAACTTTATTGAAGGCATAGCTGACTTCAGCATGTCAAAAGAGGCAGGAACAATAAATGCAGCCCATCTCAGGAGGAGACATCGCCACCTGATCTGACCTCTTGCAAAACCCTCTGAAAGATTTGCTGGATATCTCCTTGACTCCTAAATACACAAAACTTTATTTTCATGCAGACTTCCCAAAGAGATTCTCATAAAAGGTGGACGGGCGTCGTGGTAGCTTTCACTGTTCAGTGGCTGTAAAAAGCTGGTTGTTTCTTTGACATGTACTGGAATGTTAATATTGCCACTGTCAGAAACGGAGGAGAGGAAAAGGGTCTTATTCACATTTAATACGCCGTGATCAGCAGGGCTTCAGGAGCAGAACCCGAGCGCTGTTTATCAAACTCGTATGTCTGGGTGAGAAAAGGGACAAAGAGGGACTGGACTGAAGCCTTATTGTGCTCATAGATCTTTTGATACATTATAAAGTAATTATTTCCTTAAAGTTTAGCTTGTTTTATTATGCcactttaaatcttttaaatacatttgtaaATGCAACGAGAAGCACAATCACACAGCAGATAGAGATATCATTTAAAGTCGTCTTCAATAAAAGTCtctacatgaaaataaaaatgtgctttcCCTTCATACATGACACTGTCATCCTTACAACCTTCCGGCCGAAAAGGCTGGTACAGCataaccagaaaaagaaaagatgctCAACATGTTTAGACATCGAAGCTTATCCAACACGACCTCCGGCCAGAAACTGTCGTTATTAAACAGAGGCACAAACCTAGGCTTTACATCACCAAATTaacacttctttctttttttttttttttttttttctttttttttgtttttttgtccctTAGAGGAAGCAGAGTGGTGATCAGAGAGGGAGTTCCCTCAAAGTCCCCCTCCATGTGACCGGTTCTGCAGCGGCTACATGCTGAGCAGTGCGGTATATCAGGTGCTTTTTATGCCCTCCTTGCCTTAGAGGCGCAGAAAGacaaagatagagagacagagagaaagagagagagaggagaaggcTGCACCTCCCCTGTCGCTCAGACGAGCGGTTGCTTTGGAGCGTGTCGGTTCACGCCGGCCGCCGTCTCCAGCCTCCACACGCAGATTAACGCCGGAAAACAAATTTCCGATTGGAGCTTGTGGTTTTGCACCTCTTCTTTGTCTTCGGTATCATTTTCGCACAAGTGCTTTGCACCCGCTTTGTGTATCTCTTCAGTGCGGCGGGTTCATAGTGCCGTGGCCGCgctgctgcttctgcttctgctgcATGAGGAGCTGCTCCAGCGCAGAAGGGCCTGGCTGCATCATCGAGCTTGACCAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88242 True 1705 lncRNA 0.43 3 31753121 31756304
TU88243 False 1705 lncRNA 0.43 3 31753121 31756304

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 25569 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 208487 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 219863 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 250743 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 388850 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 1067254 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 1078735 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 1087797 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1216481 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1240052 32996356 ~ 32996892 (-)
G74479 NA non-coding downstream 7659 31744351 ~ 31745462 (-)
G74417 NA non-coding downstream 102537 31567051 ~ 31650584 (-)
G74256 NA non-coding downstream 442212 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 526533 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 636685 31056485 ~ 31116436 (-)
LOC113540068 NA non-coding upstream 110778 31867082 ~ 31870008 (-)
G74553 NA non-coding upstream 137547 31893851 ~ 31901557 (-)
LOC117597178 NA non-coding upstream 152344 31908648 ~ 31909914 (-)
LOC117597180 NA non-coding upstream 175001 31931305 ~ 31932063 (-)
LOC113540655 NA non-coding upstream 355282 32111586 ~ 32112411 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 475872 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 977302 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 1002153 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1730596 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 2022264 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 114214 31870518 ~ 31871874 (-)
G74547 NA other upstream 118005 31874309 ~ 31874827 (-)
G74550 NA other upstream 123730 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 126639 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 149322 31905626 ~ 31910974 (-)

Expression


Co-expression Network