G74479


Basic Information

Item Value
gene id G74479
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31744351 ~ 31745462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88271
AAAAGGCCGAGTAGCTGGATCCAGCTGATCTGTTCGTCCGAGCTGTAGCTTTGGTCGTCAGTCTCGTTGCTGAAGTCTCGGAGGTGATGCAGCTCAAACAGGTTAATAACTGTTATGTGGACGAGCTGCTGAGAGCTGAAGGCTTTCTGGAGAATCAGTCGCTGTAATagagccattaaaaaaaaaaaaaaagagagactgtgtgtataCTGTCACTACACGACTAAACATTTGAACCGAGTGCGTAAGTGTGTAATACGAGCGGCGAGCTTAGGGACAGAAAAGATCCAGATGCACATAAAAGGCTGTCTACAGTTAACAAACATCAGCCATTAGCCAGTGGACCAGAGCATCAGCACAGCGTTGAGCAAAATTCCCTTCACATGAGAAGATGTTTCAGTAAAGCGGGTCTCTTAACAGCCAaaaggtgtattttttttgtggttcacaatattttattttggataTTTTGTCCTGAGCCATGTGGAGTCTAGTATAATTTATAGTTCAGCAGCCCAAACTGTTACCGctgtttaattttacagtttaaatgcTTTATATTGTGTTAgaaacatacatacagtatccACTGACCTGGCAGCCTTcatgaatgatttaaaaatgtttttggttCACGCAGATATTACATGCAGCCTAAACCAGCTGCACTACTGCAGTGATGTTTTTCACCTGATCTCCATATGATTAAACACTTCCTTCTAACTACATCCTCATCAGAGTGAAAGACGCCGCCCGTGTACCTGAAACTGCTCTTCCAGCTTCTCCCTCAGCGCACCGAGTTTCTCCAGGCTTTTGCTGAGGTAAACGTGTCCGTGGAACTTGATGAAAGCCTTGATGAAATCGGACACGTTCCACTTCGTTTTGACCTCATCACGGCTGCAGAGGTACAGTCAAGAACAGCTCATGGATCTCACATCACATCATTAAACCATATAACTGCtgctaaaatatataaatacttcCCTAATTTATTGACTCATACTGTACATCTGTGATACTACAGATATAAATCAAACACCAGTGTTAAAAAAACTTCTAAAGAAAACTCCGTGTACCTCTCGAGAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88271 True 1088 lncRNA 0.42 2 31744351 31745462

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 16799 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 199717 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 211093 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 241973 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 380080 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 1078096 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 1089577 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 1098639 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1227323 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1250894 32996356 ~ 32996892 (-)
G74417 NA non-coding downstream 93767 31567051 ~ 31650584 (-)
G74256 NA non-coding downstream 433442 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 517763 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 627915 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 712971 31030389 ~ 31031380 (-)
G74457 NA non-coding upstream 7659 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 121620 31867082 ~ 31870008 (-)
G74553 NA non-coding upstream 148389 31893851 ~ 31901557 (-)
LOC117597178 NA non-coding upstream 163186 31908648 ~ 31909914 (-)
LOC117597180 NA non-coding upstream 185843 31931305 ~ 31932063 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 467102 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 968532 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 993383 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1721826 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 2013494 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 125056 31870518 ~ 31871874 (-)
G74547 NA other upstream 128847 31874309 ~ 31874827 (-)
G74550 NA other upstream 134572 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 137481 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 160164 31905626 ~ 31910974 (-)

Expression


Co-expression Network