G74547


Basic Information

Item Value
gene id G74547
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31874309 ~ 31874827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88350
attcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcaaattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttagtcTGTCCTGCAACTACACAACAAGTTATACAGGAGACTACCTGCACTGGTACAggcaatatccaaaatctaaacccgagttccttctttatatttctccaagtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaatTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU88350 True 354 TUCP 0.44 2 31874309 31874827

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 146757 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 329675 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 341051 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 371931 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 510038 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 948731 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 960212 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 969274 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1097958 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1121529 32996356 ~ 32996892 (-)
LOC113540068 NA non-coding downstream 4301 31867082 ~ 31870008 (-)
G74458 NA non-coding downstream 88552 31736292 ~ 31785757 (-)
G74457 NA non-coding downstream 118005 31753121 ~ 31756304 (-)
G74479 NA non-coding downstream 128847 31744351 ~ 31745462 (-)
G74417 NA non-coding downstream 223725 31567051 ~ 31650584 (-)
G74553 NA non-coding upstream 19024 31893851 ~ 31901557 (-)
LOC117597178 NA non-coding upstream 33821 31908648 ~ 31909914 (-)
LOC117597180 NA non-coding upstream 56478 31931305 ~ 31932063 (-)
LOC113540655 NA non-coding upstream 236759 32111586 ~ 32112411 (-)
LOC117595679 NA non-coding upstream 250745 32125572 ~ 32126462 (-)
LOC117597010 NA other downstream 2435 31870518 ~ 31871874 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 597060 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 1098490 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 1123341 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1851784 30019506 ~ 30022525 (-)
G74550 NA other upstream 5207 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 8116 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 30799 31905626 ~ 31910974 (-)
G74607 NA other upstream 191985 32066812 ~ 32067337 (-)
LOC117596957 NA other upstream 199556 32074383 ~ 32113455 (-)

Expression


Co-expression Network