G74573


Basic Information

Item Value
gene id G74573
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32207361 ~ 32207824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88389
ttttcattcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtaggtgaaggtgttaatgttactctgtcctgcaaataTGACACAAGAGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttatgaaagTGGAGCTATGAGTCCAGATCTCcccc

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU88389 True 264 lncRNA 0.41 2 32207361 32207824

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 102070 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 453694 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 501092 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 522894 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 597164 31596514 ~ 31610197 (+)
LOC117597128 NA coding downstream 109164 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 128264 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 130487 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 132671 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 148172 32355996 ~ 32356585 (+)
LOC117597174 NA non-coding upstream 260819 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 344204 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 359495 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 464266 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 499925 31707228 ~ 31707436 (+)
G74578 NA non-coding downstream 76384 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 110608 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 325022 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 335101 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 352439 32560263 ~ 32560769 (+)
LOC117596940 NA other upstream 164208 31987395 ~ 32043153 (+)
LOC117596930 NA other upstream 171768 32034799 ~ 32035593 (+)
LOC117597124 NA other upstream 232293 31974340 ~ 31975068 (+)
LOC117597123 NA other upstream 235082 31970934 ~ 31972279 (+)
LOC117596936 NA other upstream 239404 31967199 ~ 31967957 (+)
LOC117596932 NA other downstream 5435 32213259 ~ 32214313 (+)
LOC117597126 NA other downstream 40094 32247918 ~ 32261238 (+)
LOC117597127 NA other downstream 61520 32269344 ~ 32272134 (+)
LOC117596951 NA other downstream 66211 32274035 ~ 32274523 (+)
LOC117596933 NA other downstream 72190 32280014 ~ 32280776 (+)

Expression


Co-expression Network