G74578


Basic Information

Item Value
gene id G74578
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32284208 ~ 32296534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88394
GGAACAGTCAGCGTCTAGGGAAATACAGAGAGAGCTggagggaaacacacacaacacagcagaTTAGTAACAACTTGGAAACCAACAGAAGAACAACGAGCAGGTAAGGGTCTGTAGCCTAATAGTAGGTCAAACGCTGACTGAACCGAAACATGTGCTTATATGTGGTGCTGATCAGGCGTGATGACGAGTGACTTGTTAGAACTCTGGCGATGGTGGGCGTTGACTAGGGAATGGCTCCGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88394 True 244 lncRNA 0.49 2 32284208 32296534

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 178917 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 530541 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 577939 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 599741 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 674011 31596514 ~ 31610197 (+)
LOC117597128 NA coding downstream 20454 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 39554 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 41777 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 43961 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 59462 32355996 ~ 32356585 (+)
G74573 NA non-coding upstream 76384 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 337666 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 421051 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 436342 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 541113 31734656 ~ 31743095 (+)
G74580 NA non-coding downstream 21898 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 236312 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 246391 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 263729 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 410559 32707093 ~ 32707498 (+)
LOC117596933 NA other upstream 3432 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 9685 32274035 ~ 32274523 (+)
LOC117597127 NA other upstream 12074 32269344 ~ 32272134 (+)
LOC117597126 NA other upstream 22970 32247918 ~ 32261238 (+)
LOC117596932 NA other upstream 69895 32213259 ~ 32214313 (+)
LOC117596941 NA other downstream 289537 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 298302 32594836 ~ 32596942 (+)
G74651 NA other downstream 391783 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 392892 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 397069 32693603 ~ 32694103 (+)

Expression


Co-expression Network