Gene
RNA
| Item | Value |
|---|---|
| gene id | G74644 |
| gene name | NA |
| gene type | unknown |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32644024 ~ 32644534 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0009615 | response to virus | biological_process |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| ko05168 | Herpes simplex virus 1 infection |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU88461 | True | 346 | TUCP | 0.42 | 2 | 32644024 | 32644534 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 916472 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 1099390 | 31538539 ~ 31544634 (-) |
| psmb5 | psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 | coding | downstream | 1110766 | 31528370 ~ 31533258 (-) |
| LOC113540461 | LOC108267708,LOC107591395 | coding | downstream | 1141646 | 31379473 ~ 31502378 (-) |
| LOC113540063 | LOC108267709 | coding | downstream | 1279753 | 31360647 ~ 31364271 (-) |
| LOC117597140 | NA | coding | upstream | 179024 | 32823558 ~ 32825567 (-) |
| LOC117596924 | NA | coding | upstream | 190505 | 32835039 ~ 32835722 (-) |
| LOC117596934 | NA | coding | upstream | 199567 | 32844101 ~ 32845270 (-) |
| LOC117597141 | NA | coding | upstream | 328251 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 351822 | 32996356 ~ 32996892 (-) |
| G74640 | NA | non-coding | downstream | 16028 | 32627561 ~ 32627996 (-) |
| LOC117596963 | NA | non-coding | downstream | 441170 | 32202081 ~ 32202854 (-) |
| G74622 | NA | non-coding | downstream | 443220 | 32200365 ~ 32200804 (-) |
| G74619 | NA | non-coding | downstream | 479610 | 32164054 ~ 32164414 (-) |
| LOC117595679 | NA | non-coding | downstream | 517562 | 32125572 ~ 32126462 (-) |
| LOC117596962 | NA | non-coding | upstream | 2747 | 32647281 ~ 32648098 (-) |
| G74646 | NA | non-coding | upstream | 7253 | 32651787 ~ 32652241 (-) |
| LOC117597135 | NA | non-coding | upstream | 13827 | 32658361 ~ 32658922 (-) |
| G74647 | NA | non-coding | upstream | 14998 | 32659532 ~ 32659961 (-) |
| LOC117596968 | NA | non-coding | upstream | 123054 | 32767588 ~ 32769282 (-) |
| LOC117596950 | NA | other | downstream | 10313 | 32633213 ~ 32633711 (-) |
| LOC117596946 | NA | other | downstream | 440119 | 32203394 ~ 32203905 (-) |
| LOC117597125 | NA | other | downstream | 465900 | 32175807 ~ 32178124 (-) |
| LOC117596948 | NA | other | downstream | 468614 | 32174918 ~ 32175410 (-) |
| LOC113540132 | NA | other | downstream | 474788 | 32168582 ~ 32169236 (-) |
| LOC117596929 | NA | other | upstream | 17358 | 32661892 ~ 32665420 (-) |
| G74703 | NA | other | upstream | 221412 | 32865946 ~ 32868466 (-) |
| LOC117597171 | NA | other | upstream | 301600 | 32946134 ~ 32947158 (-) |
| LOC117597170 | NA | other | upstream | 305300 | 32949834 ~ 32950494 (-) |
| LOC117597177 | NA | other | upstream | 326470 | 32971004 ~ 32971513 (-) |
