G74647


Basic Information

Item Value
gene id G74647
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32659532 ~ 32659961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88464
cagaatcctcacagagctgtgttcagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgacggatgaagataccaacattatcgggaaagaaacagacactgttactctgaaatgttcatatgagacAAACAGCAATGACATTTATctttactggtacaaacaatatcctaacagcgcaccacagtttttactgtataaaggcgCAAGGTCAAGATCTGGAGAGCGCAAACCCACTGAC

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU88464 True 304 lncRNA 0.42 2 32659532 32659961

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 931980 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1114898 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 1126274 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 1157154 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 1295261 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 163597 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 175078 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 184140 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 312824 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 336395 32996356 ~ 32996892 (-)
LOC117597135 NA non-coding downstream 610 32658361 ~ 32658922 (-)
G74646 NA non-coding downstream 7291 32651787 ~ 32652241 (-)
LOC117596962 NA non-coding downstream 11434 32647281 ~ 32648098 (-)
G74640 NA non-coding downstream 31536 32627561 ~ 32627996 (-)
LOC117596963 NA non-coding downstream 456678 32202081 ~ 32202854 (-)
LOC117596968 NA non-coding upstream 107627 32767588 ~ 32769282 (-)
LOC117596927 NA non-coding upstream 117005 32776966 ~ 32777798 (-)
LOC117596938 NA non-coding upstream 143593 32803554 ~ 32804222 (-)
LOC117596923 NA non-coding upstream 149635 32809596 ~ 32810296 (-)
LOC117597139 NA non-coding upstream 150471 32810432 ~ 32811735 (-)
G74644 NA other downstream 14998 32644024 ~ 32644534 (-)
LOC117596950 NA other downstream 25821 32633213 ~ 32633711 (-)
LOC117596946 NA other downstream 455627 32203394 ~ 32203905 (-)
LOC117597125 NA other downstream 481408 32175807 ~ 32178124 (-)
LOC117596948 NA other downstream 484122 32174918 ~ 32175410 (-)
LOC117596929 NA other upstream 1931 32661892 ~ 32665420 (-)
G74703 NA other upstream 205985 32865946 ~ 32868466 (-)
LOC117597171 NA other upstream 286173 32946134 ~ 32947158 (-)
LOC117597170 NA other upstream 289873 32949834 ~ 32950494 (-)
LOC117597177 NA other upstream 311043 32971004 ~ 32971513 (-)

Expression


Co-expression Network