G74676


Basic Information

Item Value
gene id G74676
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32915540 ~ 32915973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88499
cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagtCACTTTTCACAACTCCtaaagttgtagatgaaggtgataatgttactctgtcctgcagatACACATCCAGCAGTGCTATAGCAAACAACTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGAGATCTGAGTCCCAACCCTCCCTCAAGAATGTCTGCT

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU88499 True 269 lncRNA 0.41 2 32915540 32915973

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 387880 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 421916 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 438777 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 510439 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 518143 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 258501 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 341256 33257229 ~ 33259292 (+)
LOC117596944 NA non-coding upstream 34175 32880711 ~ 32881365 (+)
LOC117596969 NA non-coding upstream 175429 32738103 ~ 32740111 (+)
G74655 NA non-coding upstream 208042 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 354771 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 362236 32542925 ~ 32553304 (+)
LOC117596970 NA non-coding downstream 10643 32926616 ~ 32927014 (+)
G74686 NA non-coding downstream 108003 33023976 ~ 33024331 (+)
G74747 NA non-coding downstream 209695 33125668 ~ 33125884 (+)
G74750 NA non-coding downstream 232564 33148537 ~ 33149053 (+)
LOC117597138 NA other upstream 167747 32745500 ~ 32747793 (+)
LOC117596925 NA other upstream 172403 32742265 ~ 32743137 (+)
LOC117597137 NA other upstream 179269 32721824 ~ 32736271 (+)
LOC117596949 NA other upstream 195076 32713173 ~ 32720464 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 214070 33130043 ~ 33148431 (+)

Expression


Co-expression Network