Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117597171 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32946134 ~ 32947158 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU88533 | False | 472 | TUCP | 0.43 | 2 | 32946181 | 32946800 |
| XR_004578073.1 | True | 632 | lncRNA | 0.45 | 4 | 32946134 | 32947158 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117596934 | NA | coding | downstream | 100864 | 32844101 ~ 32845270 (-) |
| LOC117596924 | NA | coding | downstream | 110412 | 32835039 ~ 32835722 (-) |
| LOC117597140 | NA | coding | downstream | 120567 | 32823558 ~ 32825567 (-) |
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 1218582 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 1401500 | 31538539 ~ 31544634 (-) |
| LOC117597141 | NA | coding | upstream | 25627 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 49198 | 32996356 ~ 32996892 (-) |
| LOC117597007 | NA | coding | upstream | 85860 | 33033018 ~ 33033661 (-) |
| c4h14orf119 | LOC108267721 | coding | upstream | 183929 | 33131087 ~ 33135775 (-) |
| cbln12 | LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 | coding | upstream | 218784 | 33165942 ~ 33168027 (-) |
| LOC117596966 | NA | non-coding | downstream | 73111 | 32871746 ~ 32873023 (-) |
| G74702 | NA | non-coding | downstream | 83475 | 32862207 ~ 32862659 (-) |
| LOC117596967 | NA | non-coding | downstream | 94759 | 32849927 ~ 32851375 (-) |
| LOC113540133 | NA | non-coding | downstream | 129853 | 32815429 ~ 32816281 (-) |
| LOC117597139 | NA | non-coding | downstream | 134399 | 32810432 ~ 32811735 (-) |
| G74717 | NA | non-coding | upstream | 78263 | 33025421 ~ 33025846 (-) |
| G74720 | NA | non-coding | upstream | 83884 | 33031042 ~ 33031426 (-) |
| G74731 | NA | non-coding | upstream | 137240 | 33084398 ~ 33084836 (-) |
| G74736 | NA | non-coding | upstream | 160971 | 33108129 ~ 33108638 (-) |
| G74737 | NA | non-coding | upstream | 167586 | 33114744 ~ 33114997 (-) |
| G74703 | NA | other | downstream | 77668 | 32865946 ~ 32868466 (-) |
| LOC117596929 | NA | other | downstream | 280714 | 32661892 ~ 32665420 (-) |
| G74644 | NA | other | downstream | 301600 | 32644024 ~ 32644534 (-) |
| LOC117596950 | NA | other | downstream | 312423 | 32633213 ~ 32633711 (-) |
| LOC117596946 | NA | other | downstream | 742229 | 32203394 ~ 32203905 (-) |
| LOC117597170 | NA | other | upstream | 2676 | 32949834 ~ 32950494 (-) |
| LOC117597177 | NA | other | upstream | 23846 | 32971004 ~ 32971513 (-) |
| LOC117597009 | NA | other | upstream | 87745 | 33034903 ~ 33042101 (-) |
| LOC117597008 | NA | other | upstream | 89903 | 33037061 ~ 33037706 (-) |
| LOC117597193 | NA | other | upstream | 110340 | 33057498 ~ 33058362 (-) |
