G74744


Basic Information

Item Value
gene id G74744
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33122592 ~ 33122959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88571
cctcacagagctgtgttcagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgaaggatgaagataccaacattatcaggaaagaaacagacactgttactctgaaatgttcatatgagtcAAGCAGCAATAACATTTGgctttactggtacaaacaa

Function

NR:

description
PREDICTED: sorting nexin-27-like isoform X1

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU88571 True 223 lncRNA 0.40 2 33122592 33122959

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 88931 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 125700 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 144892 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 277322 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 286870 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 8128 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 42983 33165942 ~ 33168027 (-)
G74737 NA non-coding downstream 7595 33114744 ~ 33114997 (-)
G74736 NA non-coding downstream 13954 33108129 ~ 33108638 (-)
G74731 NA non-coding downstream 37756 33084398 ~ 33084836 (-)
G74720 NA non-coding downstream 91166 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 96746 33025421 ~ 33025846 (-)
G74748 NA non-coding upstream 2708 33125667 ~ 33125874 (-)
LOC117597199 NA other downstream 12274 33109818 ~ 33110318 (-)
LOC117597204 NA other downstream 20952 33101134 ~ 33101640 (-)
LOC117597195 NA other downstream 23104 33098751 ~ 33099488 (-)
LOC117596990 NA other downstream 31464 33090206 ~ 33091128 (-)
LOC117597189 NA other downstream 39270 33082197 ~ 33083322 (-)

Expression


Co-expression Network