LOC113525282 (LOC108267103)


Basic Information

Item Value
gene id LOC113525282
gene name LOC108267103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 262446 ~ 272620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911758.2
CCGTCCAGCAGGTGGCGCTAATGCAGCACAAAGCTCTAATAAACCTCCATGGAGTGAAAGCAGGAGAAAGCGAGCTGCAGTGTTTGTACACAGCCAGTTTCTCCATGAAAACATTTCTGACTCTTTTACACAGACATGATATGAACAGTGCCCTGTTGCAAGCTGATGTCTGGAAGAAGCTCTAGTAGTGAGCAAAAGACTTCTGATACTATCTCCACAAACACCGCTCACAGACAAATGCCTAAAATAATCCACTCCTACTCAGactgtgggaagagttttactcatCTCCGAAAACACCACCGCATCCATACGGGAGAGAAACCGTATCGCTGCTCActgtgtggaaagagttttactcaGCAGAGTACTCTCCAAACACACCAACGCatccacacaggagagaagccgtatcactgtgTAGAGTGTGGAAAAAGTTTTAATCAGCAGAATTCTCTCCAGAAACACCAGCGTATCCACACAGGTGAGAAACCGTATCGCTGCTCAgtgtgtggaaagagttttactcaACAGTGTACTCTTCAACGACACCAGCGCGTTCACACCGGAGAGAAACCGTATCACTGTTCGGAAtgcgggaagagttttactGAGAGAGATGATCTCCAgcgacaccagcgcattcacacaggagacaAACCGTATATCTGCTCGCAATGTGGGAAGAGCTTTACACAACAAAGTCATCTACGGCAGCACCAGCgcactcacactggagagaagccGTACCATTGCTcggagtgtgggaagagtttcacTGAGAGGGGCCATCTTCAacgacaccagcgcattcacaccgGAGAGAAGCCCTATCACTGTTTCCAGTGTGGGCGGAGTTTTATTTCCCCGAGTATCCTCCAgcaacaccagcgcattcacaccgGAGAGAAACCGTATCACTGCAcgcagtgtggaaagagtttcaCTCAACAAAGTACTCTACAGCAACACCAAcgcattcacactggagatAAACCGTATCATTGCTGTGAGTGCGGGAAGAGTTTCAATCGCAATAGTCAACTCCAACACCATCGGTGTGTTCAGTGACATCAGTGGGAAAAACTTCACTTATATATATGAACACACAGCCTATAGCCAATTACACAAACTTCAAGAACATGTATTTGAATTTTAGCATTTACTTTGTGAAGATTTAAATTAGGAATCTGAAGATCAATGAGTTTTTAGATTGGAATTGGCCAGATTAGGCCAATTGGATTAAATATGGGATAAGTGATCGGACCCTTTCTCTTTTATCTAACC
>XM_034303964.1
AATGCACCATAACCCCACACACCTTCATGTGACAGAAGAAGTCGAGCTGCATTGTTGTTTGCACAGCAAATCCAGTTTCACAGAGACATGGTATGAACAATGCCCTGTTGCAACTTGATGTCTGGAACAAGCTCTAACAGTCAGCAGAAGACTTCTGATACTAACTGCACAAACACCACCCACAGACAAATGCCTAAAATAATCTCTCCTAAAGGAGAGAAGTCGTATCAGTGCtcagagtgtgggaagagttttactcagCAGAGCACTCTTCAgcgacaccagcgcattcatACAGGAGAAAAGACCCACCATTGTTTActgtgtggaaagagttttaatcAGCAGAGTACTTTTCAgcgacaccagcgcattcacaccgGAGAGAAACCGTATCGCTGCTCGCAGTGTGGGACTAGTTTCACTATACAGAGCAATCTGAGACGACACCAACGCatccacacaggagagaagccgtatcactgctcgcTGTGTGGGAAACGGTTTACTAACCATAGCACCCTCCAGCATCACCAGCGCatccacacaggagagaagccgtatcagtgcTCTCACTGTGGAAGGAGTTTTACTGAGCACGGTACTCTCCAGCGACACCAACGCATCCACACCGGAGAGAAACCCTATCACTGCTTAGactgtgggaagagttttaaacaacaaactgctctccagcaacatcagcgcattcacaccggagagaagccgtatcactgcacGCAATGCGGGAAGAATTTTATTCAACAAGGTCATCTCCAACAACACCAGCGCACTCATAAAGGAGAGAAGCCCTACGATTCtGACAactgtgggaagagttttactcatCTCCGAAAACACCACCGCATCCATACGGGAGAGAAACCGTATCGCTGCTCActgtgtggaaagagttttactcaGCAGAGTACTCTCCAAACACACCAACGCatccacacaggagagaagccgtatcactgtgTAGAGTGTGGAAAAAGTTTTAATCAGCAGAATTCTCTCCAGAAACACCAGCGTATCCACACAGGTGAGAAACCGTATCGCTGCTCAgtgtgtggaaagagttttactcaACAGTGTACTCTTCAACGACACCAGCGCGTTCACACCGGAGAGAAACCGTATCACTGTTCGGAAtgcgggaagagttttactGAGAGAGATGATCTCCAgcgacaccagcgcattcacacaggagacaAACCGTATATCTGCTCGCAATGTGGGAAGAGCTTTACACAACAAAGTCATCTACGGCAGCACCAGCgcactcacactggagagaagccGTACCATTGCTcggagtgtgggaagagtttcacTGAGAGGGGCCATCTTCAacgacaccagcgcattcacaccgGAGAGAAGCCCTATCACTGTTTCCAGTGTGGGCGGAGTTTTATTTCCCCGAGTATCCTCCAgcaacaccagcgcattcacaccgGAGAGAAACCGTATCACTGCAcgcagtgtggaaagagtttcaCTCAACAAAGTACTCTACAGCAACACCAAcgcattcacactggagatAAACCGTATCATTGCTGTGAGTGCGGGAAGAGTTTCAATCGCAATAGTCAACTCCAACACCATCGGTGTGTTCAGTGACATCAGTGGGAAAAACTTCACTTATATATATGAACACACAGCCTATAGCCAATTACACAAACTTCAAGAACATGTATTTGAATTTTAGCATTTACTTTGTGAAGATTTAAATTAGGAATCTGAAGATCAATGAGTTTTTAGATTGGAATTGGCCAGATTAGGCCAATTGGATTAAATATGGGATAAGTGATCGGACCCTTTCTCTTTTATCTAACC

Function

NR:

description
PREDICTED: zinc finger protein 585A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911758.2 False 1287 mRNA 0.46 2 262446 266287
XM_034303964.1 True 1848 mRNA 0.47 4 262446 272620

Neighbor

gene id symbol gene type direction distance location
LOC113525290 NA coding downstream 77473 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 154352 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 177982 65830 ~ 84464 (-)
LOC117597016 NA coding upstream 31063 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 427429 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 437739 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 575453 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 590758 863378 ~ 886395 (-)
G57727 NA non-coding downstream 110 222221 ~ 262336 (-)
G57723 LOC108267083 non-coding downstream 5770 213341 ~ 256676 (-)
G57716 NA non-coding downstream 55291 203973 ~ 207155 (-)
G57711 NA non-coding downstream 64780 192687 ~ 197666 (-)
G57706 NA non-coding downstream 79181 183056 ~ 183265 (-)
G57776 NA non-coding upstream 44872 317492 ~ 352685 (-)
G57778 NA non-coding upstream 53725 326345 ~ 357054 (-)
G57760 NA non-coding upstream 63650 336270 ~ 421309 (-)
G57752 NA non-coding upstream 71951 344571 ~ 394411 (-)
G57763 NA non-coding upstream 81387 354007 ~ 549005 (-)
LOC117596995 LOC108268238 other downstream 164329 84815 ~ 98117 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other upstream 7362 279982 ~ 300017 (-)
G57733 NA other upstream 28360 300980 ~ 856952 (-)
LOC117597012 NA other upstream 74439 347059 ~ 497563 (-)
LOC117597013 NA other upstream 102623 375243 ~ 451693 (-)
G57830 NA other upstream 339623 612243 ~ 614243 (-)

Expression


Co-expression Network