LOC113525290


Basic Information

Item Value
gene id LOC113525290
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 177871 ~ 184973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911766.2
GTGTTAGCGGGAGGTCAGAGAGCTGTGAAAGAAACCTAACTGCAAATCATTCAAgtattattttacacactgtgAGTGTGGTAGAGCATTATTTTACTAGATTACTGATtctttaatattattgttatttatttatactatattGTTCATAGTGGAGATAATTACTGGTGCTGGTCAGGATGTCTGATTATATTCTggaaaagaaaagcagctcaacaCTTCTGAGGTCTAACATTCAAAAGCTTTCTAAGCCACTGATGGAGAAAAGAAGACGAGCTCGCATTAACCGCAGCCTGAGTCGACTGAAAAGCCTCCTCCTGCAGACGCTTCATAAACACACCACACAACATGCCAAGCTGGAGAAAGCAGATATTCTGGAACTGACAGTGAAACATATCAGAAACATGCAACAGAAAGCTGTGCTGGCGAGTTACCGAGCGGGGTACAGCACCTGTGCACGCGATGTGGCGCACTTCCTGGCcggctgtgagtgtgtgagcagtgagaTGAGGGTGCGTTTGCTTGCTCACCTGGCCAGGTGTTTATCAGAGATGAACATTGTCACTCCACCAGCCACTGCAGCATGCACATCTTCTGCACAGCTCAGCAACTATAAAACCAGAACCATCCTGTTCCCAGCAGTCATGACAAACAGTGTCTTCAGAGACATACTGATGAATAACGGGATGTTTACTCCTTTAAACTCCAGTGTGGTACATGTAAACCTCAGAGGGCAGCTGTGGAGACCGTGGTAGTCGGGGGTCAGTAGGAAATTTGGTCCCCGTGACAGGTTAAAGCTTTGGGCTGGAACATTCTCATTCTCCTGgacattttttgtttcttctggTCTCCTTGGCGAGATACTCGtcactacaaaaacaaaagtccTGACAGTTTTGTTCAGACCTGATCCTGCTCCTCCTACCTGGGTGGAGTCAAGCCAAAAAGCCCACAAGATGCACAACATGGAACAACACACTTATCcagtctgaaacacacagagtTGATTCCACCCACTTGTTTCAATTCCacccaggtaggaggagctggatcaggtccaactccaccccctggacgtTTGGTTCTCTACTTGCCCTCGGAGTCCCTTAACCCCCCTATTTATAGCACACCTGGTGGTAGAagaaacgttaaaaaaaaaaatgaataaattaaaaatacctCAAACCCTTACTGTGACTGTCAGCGTTTTCCAAGCCAGCAATGGAGAAATGTAGAAGAGTGACGTAACCCTGTTATCTAAATTtaaatccagatttctgtaaagctgctctgtcacaatgtccattgttgaaGCGcagataaataaaactgaattgagttgaa
>XM_026911767.2
AGGGGaatgtaaatgtcattttgCTCTGACAGCTTCACAGAGACTGTGggCTTTCTAAGCCACTGATGGAGAAAAGAAGACGAGCTCGCATTAACCGCAGCCTGAGTCGACTGAAAAGCCTCCTCCTGCAGACGCTTCATAAACACACCACACAACATGCCAAGCTGGAGAAAGCAGATATTCTGGAACTGACAGTGAAACATATCAGAAACATGCAACAGAAAGCTGTGCTGGCGAGTTACCGAGCGGGGTACAGCACCTGTGCACGCGATGTGGCGCACTTCCTGGCcggctgtgagtgtgtgagcagtgagaTGAGGGTGCGTTTGCTTGCTCACCTGGCCAGGTGTTTATCAGAGATGAACATTGTCACTCCACCAGCCACTGCAGCATGCACATCTTCTGCACAGCTCAGCAACTATAAAACCAGAACCATCCTGTTCCCAGCAGTCATGACAAACAGTGTCTTCAGAGACATACTGATGAATAACGGGATGTTTACTCCTTTAAACTCCAGTGTGGTACATGTAAACCTCAGAGGGCAGCTGTGGAGACCGTGGTAGTCGGGGGTCAGTAGGAAATTTGGTCCCCGTGACAGGTTAAAGCTTTGGGCTGGAACATTCTCATTCTCCTGgacattttttgtttcttctggTCTCCTTGGCGAGATACTCGtcactacaaaaacaaaagtccTGACAGTTTTGTTCAGACCTGATCCTGCTCCTCCTACCTGGGTGGAGTCAAGCCAAAAAGCCCACAAGATGCACAACATGGAACAACACACTTATCcagtctgaaacacacagagtTGATTCCACCCACTTGTTTCAATTCCacccaggtaggaggagctggatcaggtccaactccaccccctggacgtTTGGTTCTCTACTTGCCCTCGGAGTCCCTTAACCCCCCTATTTATAGCACACCTGGTGGTAGAagaaacgttaaaaaaaaaaatgaataaattaaaaatacctCAAACCCTTACTGTGACTGTCAGCGTTTTCCAAGCCAGCAATGGAGAAATGTAGAAGAGTGACGTAACCCTGTTATCTAAATTtaaatccagatttctgtaaagctgctctgtcacaatgtccattgttgaaGCGcagataaataaaactgaattgagttgaa
>XM_034303966.1
ACGTGGTGTTAGCGGGAGGTCAGAGAGCTGTGAAAGAAACCTAACTGCAAATCATTCAAgtattattttacacactTGGAGATAATTACTGGTGCTGGTCAGGATGTCTGATTATATTCTggaaaagaaaagcagctcaacaCTTCTGAGGTCTAACATTCAAAAGCTTTCTAAGCCACTGATGGAGAAAAGAAGACGAGCTCGCATTAACCGCAGCCTGAGTCGACTGAAAAGCCTCCTCCTGCAGACGCTTCATAAACACACCACACAACATGCCAAGCTGGAGAAAGCAGATATTCTGGAACTGACAGTGAAACATATCAGAAACATGCAACAGAAAGCTGTGCTGGCGAGTTACCGAGCGGGGTACAGCACCTGTGCACGCGATGTGGCGCACTTCCTGGCcggctgtgagtgtgtgagcagtgagaTGAGGGTGCGTTTGCTTGCTCACCTGGCCAGGTGTTTATCAGAGATGAACATTGTCACTCCACCAGCCACTGCAGCATGCACATCTTCTGCACAGCTCAGCAACTATAAAACCAGAACCATCCTGTTCCCAGCAGTCATGACAAACAGTGTCTTCAGAGACATACTGATGAATAACGGGATGTTTACTCCTTTAAACTCCAGTGTGGTACATGTAAACCTCAGAGGGCAGCTGTGGAGACCGTGGTAGTCGGGGGTCAGTAGGAAATTTGGTCCCCGTGACAGGTTAAAGCTTTGGGCTGGAACATTCTCATTCTCCTGgacattttttgtttcttctggTCTCCTTGGCGAGATACTCGtcactacaaaaacaaaagtccTGACAGTTTTGTTCAGACCTGATCCTGCTCCTCCTACCTGGGTGGAGTCAAGCCAAAAAGCCCACAAGATGCACAACATGGAACAACACACTTATCcagtctgaaacacacagagtTGATTCCACCCACTTGTTTCAATTCCacccaggtaggaggagctggatcaggtccaactccaccccctggacgtTTGGTTCTCTACTTGCCCTCGGAGTCCCTTAACCCCCCTATTTATAGCACACCTGGTGGTAGAagaaacgttaaaaaaaaaaatgaataaattaaaaatacctCAAACCCTTACTGTGACTGTCAGCGTTTTCCAAGCCAGCAATGGAGAAATGTAGAAGAGTGACGTAACCCTGTTATCTAAATTtaaatccagatttctgtaaagctgctctgtcacaatgtccattgttgaaGCGcagataaataaaactgaattgagttgaa

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001757 somite specification biological_process
GO:0045664 regulation of neuron differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911766.2 True 1344 mRNA 0.44 4 177871 180275
XM_026911767.2 False 1152 mRNA 0.47 4 177871 184973
XM_034303966.1 False 1268 mRNA 0.46 5 177871 180280

Neighbor

gene id symbol gene type direction distance location
bcl10 bcl10 coding downstream 69777 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 93407 65830 ~ 84464 (-)
LOC113525282 LOC108267103 coding upstream 77473 262446 ~ 272620 (-)
LOC117597016 NA coding upstream 118710 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 515076 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 525386 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 663100 848073 ~ 857200 (-)
G57526 NA non-coding downstream 323 177318 ~ 177548 (-)
G57502 NA non-coding downstream 19104 157913 ~ 158767 (-)
G57488 LOC108268216 non-coding downstream 139918 32764 ~ 37953 (-)
G57711 NA non-coding upstream 7714 192687 ~ 197666 (-)
G57716 NA non-coding upstream 19000 203973 ~ 207155 (-)
G57723 LOC108267083 non-coding upstream 28368 213341 ~ 256676 (-)
G57727 NA non-coding upstream 37248 222221 ~ 262336 (-)
G57776 NA non-coding upstream 132519 317492 ~ 352685 (-)
LOC117596995 LOC108268238 other downstream 79754 84815 ~ 98117 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other upstream 95009 279982 ~ 300017 (-)
G57733 NA other upstream 116007 300980 ~ 856952 (-)
LOC117597012 NA other upstream 162086 347059 ~ 497563 (-)
LOC117597013 NA other upstream 190270 375243 ~ 451693 (-)
G57830 NA other upstream 427270 612243 ~ 614243 (-)

Expression


Co-expression Network