LOC113526345 (LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160)


Basic Information

Item Value
gene id LOC113526345
gene name LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8056056 ~ 8062839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913298.2
GTTGTCTCCTAGCAGAGGAGGAAACGGGGAAGGCCGAAGACTTCATGTATAAAGTAGCTAGctagaaatattattattagctaaatATTTATTAGTGTTATGAAGTACAGCGAAATGTGTTTACCTAGTGTTTAGTTGCGTTATTGAACGGAAATGACGTGATGCTAGTTCATGAAAACTTCAAGTTTTATCGTTCTGGCTAGTTTGCGCTAGCGTGCTAGCTTGTAAAGTGAAAGAGCCGCTGTTTGTTTTGATAgcatggtttaattttttttatccacaatGAATGAGAAATCGTAATCAATTCGTTCTATATATAATTACGACATTATTTATCTAATAAAGCAGTGTgtcagccgtgtgtgtgtgttttaagagtGTAGAGAAAGAGGAGCGCTGATTAGCTAGCTCTCAGACTAGCATTAGTGACTATGGGAAACTGTCTGAAATCCCCGACATCGGACGACATTTCGTTACTGCACGAGTCTCAGTCGGACCGAGCCAGCACCGGGGACGGAGCCGAGCCCGAGTTCGAGCCTCCTCCGCCCTATGAGGAGCAGGCACGCATGCCCGTGTACCATCCCACACCCAGCCAGACGTGTTTGGCCACCCAGCTGACGGAGGAGGAGCAGATCCGCATTGCTCAGCGCATCGGCCTCATTCAGCACCTGCCCAGAGGAGTGTTCGACGGAGGGAAGGACGGCTCTGAGAAGAAGATCCGAGAgTGTGTGATTTGTATGATGGACTTTGTATACGGCGACCCCATCAGGTTCCTGCCCTGCATGCACATCTACCACATGGACTGCATAGACGACTGGCTCATGCGCTCCTTCACCTGTCCTTCCTGCATGGAACCAGTCGACGCTGCGCTCCTCTCCACGTATGAGACCAACTGACCAGCTCGAGCCAGCTGCACGTCGCCATGCTCTCTGAAGAGACACCTTCCCCCCGGTTCTCAGCAGCAACATCCAGCAAAGAGCAGCCGAAGGCCTCCGTCGTGTCCTCAGCTGCACTAACTAGTTAACGGGTTAGTATAGAGGCCAATCTTTGAAGatacccaacacacacacacacacacacacacacacacttcttttccTTTATCTCACTGGTCATGCACATTCTGTATCAGTTATTCGCAATTTTTGGGGTATATTTGCAGCTGAAATAGAAGAGATTCCTGAGGACTGAACATCTCTGGTCTAGCGTTAGAGCAGAACTTTGTATTCTCAAGCACTTATCGGCTGTTCTGAGCTACAGTGATTGgacactttttcttcttcttcattttcttttttttttttttgaaaaaaacctgaaatggCTCCGCTGAAGAAATCTGGCACGGTTCTCTGTTGCTTTGACTAAACGTAGATCTGGCTCAGCAGTAATTTTAAGGCTCAGGGGTGTACAACAATCTCCCAAAACATGTGCTGACTGTATCACAAAGCTTCTTCGCCTCTGATTTACTGCTTATACCAGGACGGGCTCAGTAAAGTAAGCATTTATTACAATATGCATCACTTACACAATAACAAATGGCATATTTTAGCATCATTACCATACACCTTACACATGCTGTAGTGACATTTATACTAAAGTACTGTTGAACAGTAGTTCTATCAACACGCTCGTTctgatacattatcatttctacagaaaCTGTTGgcgcagggacttgtatgacagacgCTCCTTATCAAGGGatagtgcgaaaaacaaaaaatatccagtgagcagcaggtcTGTGAGCGGAAACGCCATGTTGCGttgagaatggctagactggctCAAGCTCACAGGAAGGTGACGCTAACTCAAATAagtactctttacaaccatggtgagcagaaaagcatctcagaacgcgcAACATGTCGATcctttccactcctgtcagccaagaactggaatctgaggctacagtgggtacatgcgtgtaataatgtataatgataTGGCAAGGCAGACGcttgtttagcatttttggaaggagtctccagtatcagtatGTCTTCCACCACTGGAAAGactacgctttgcggtttctcagtagcataagaagctgcttttatttttttctcttattaacgtcaagacAGAATAAACTGGATGCTagtgatgaaataaaagttaatgtttttataatgtaagtgacaacaatGCAAATGTTCCACACcgttaaacgtaactataaatggatcaaATGTATGACgtcattcttaaa
>XR_003402765.2
GTTGTCTCCTAGCAGAGGAGGAAACGGGGAAGGCCGAAGACTTCATGTATAAAGTAGCTAGctagaaatattattattagctaaatATTTATTAGTGTTATGAAGTACAGCGAAATGTGTTTACCTAGTGTTTAGTTGCGTTATTGAACGGAAATGACGTGATGCTAGTTCATGAAAACTTCAAGTTTTATCGTTCTGGCTAGTTTGCGCTAGCGTGCTAGCTTGTAAAGTGAAAGAGCCGCTGTTTGTTTTGATAgcatggtttaattttttttatccacaatGAATGAGAAATCGTAATCAATTCGTTCTATATATAATTACGACATTATTTATCTAATAAAGCAGTGTgtcagccgtgtgtgtgtgttttaagagtGTAGAGAAAGAGGAGCGCTGATTAGCTAGCTCTCAGACTAGCATTAGTGACTATGGGAAACTGTCTGAAATCCCCGACATCGGACGACATTTCGTTACTGCACGAGTCTCAGTCGGACCGAGCCAGCACCGGGGACGGAGCCGAGCCCGAGTTCGAGCCTCCTCCGCCCTATGAGGAGCAGGCACGCATGCCCGTGTACCATCCCACACCCAGCCAGACGTGTTTGGCCACCCAGCTGACGGAGGAGGAGCAGATCCGCATTGCTCAGCGCATCGGCCTCATTCAGCACCTGCCCAGAGGAGTGTTCGACGGAGGGAAGGACGGCTCTGAGAAGAAGATCCGAGAgTGTGTGATTTGTATGATGGACTTTGTATACGGCGACCCCATCAGGTTCCTGCCCTGCATGCACATCTACCACATGGACTGCATAGACGACTGGCTCATGCGCTCCTTCACCTGTCCTTCCTGCATGGAACCAGTCGACGCTGCGCTCCTCTCCACGTATGAGACCAACTGACCAGCTCGAGCCAGCTGCACGTCGCCATGCTCTCTGAAGAGACACCTTCCCCCCGGTTCTCAGCAGCAACATCCAGCAAAGAGCAGCCGAAGGCCTCCGTCGTGTCCTCAGCTGCACTAACTAGTTAACGGCTGAAATAGAAGAGATTCCTGAGGACTGAACATCTCTGGTCTAGCGTTAGAGCAGAACTTTGTATTCTCAAGCACTTATCGGCTGTTCTGAGCTACAGTGATTGgacactttttcttcttcttcattttcttttttttttttttgaaaaaaacctgaaatggCTCCGCTGAAGAAATCTGGCACGGTTCTCTGTTGCTTTGACTAAACGTAGATCTGGCTCAGCAGTAATTTTAAGGCTCAGGGGTGTACAACAATCTCCCAAAACATGTGCTGACTGTATCACAAAGCTTCTTCGCCTCTGATTTACTGCTTATACCAGGACGGGCTCAGTAAAGTAAGCATTTATTACAATATGCATCACTTACACAATAACAAATGGCATATTTTAGCATCATTACCATACACCTTACACATGCTGTAGTGACATTTATACTAAAGTACTGTTGAACAGTAGTTCTATCAACACGCTCGTTctgatacattatcatttctacagaaaCTGTTGgcgcagggacttgtatgacagacgCTCCTTATCAAGGGatagtgcgaaaaacaaaaaatatccagtgagcagcaggtcTGTGAGCGGAAACGCCATGTTGCGttgagaatggctagactggctCAAGCTCACAGGAAGGTGACGCTAACTCAAATAagtactctttacaaccatggtgagcagaaaagcatctcagaacgcgcAACATGTCGATcctttccactcctgtcagccaagaactggaatctgaggctacagtgggtacatgcgtgtaataatgtataatgataTGGCAAGGCAGACGcttgtttagcatttttggaaggagtctccagtatcagtatGTCTTCCACCACTGGAAAGactacgctttgcggtttctcagtagcataagaagctgcttttatttttttctcttattaacgtcaagacAGAATAAACTGGATGCTagtgatgaaataaaagttaatgtttttataatgtaagtgacaacaatGCAAATGTTCCACACcgttaaacgtaactataaatggatcaaATGTATGACgtcattcttaaa

Function

NR:

description
PREDICTED: RING finger protein 11-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913298.2 True 2227 mRNA 0.44 3 8056056 8062839
XR_003402765.2 False 2092 misc_RNA 0.45 4 8056056 8062839

Neighbor

gene id symbol gene type direction distance location
si:ch73-140j24.4 LOC108268325 coding upstream 2159 8034061 ~ 8053897 (+)
abcf3 abcf3 coding upstream 24806 8016413 ~ 8031250 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding upstream 41537 8011970 ~ 8014519 (+)
cacna1eb LOC108267309 coding upstream 47616 7937514 ~ 8008440 (+)
LOC113526772 ttc39c coding upstream 245488 7790827 ~ 7810568 (+)
LOC113526329 LOC108267642,LOC108436873 coding downstream 22307 8085146 ~ 8101065 (+)
znf830 NA coding downstream 39566 8102405 ~ 8104017 (+)
LOC113526595 LOC108267854,LOC108436868 coding downstream 168341 8231180 ~ 8356530 (+)
arhgef11 arhgef11 coding downstream 402466 8465305 ~ 8504653 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding downstream 446294 8509133 ~ 8524288 (+)
G60931 NA non-coding upstream 269421 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 353958 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 388837 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 445866 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 569905 7485766 ~ 7486151 (+)
G61096 NA non-coding downstream 46639 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 54869 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 155255 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 229089 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 232532 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1351710 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1459455 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1912254 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2459831 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2664227 5388368 ~ 5391829 (+)
LOC117597156 NA other downstream 632513 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 661706 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 831631 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1695621 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 1744482 9807321 ~ 9832280 (+)

Expression


Co-expression Network