LOC113526636 (osbpl1a)


Basic Information

Item Value
gene id LOC113526636
gene name osbpl1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7743431 ~ 7786176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913884.2
TTGACCTGCTGTGAAGTTCTATATAGTTCTTCTTAGACAGGGACTTTCAACTTTCAATCCGTTTGGTTGCTAGAAACCATAACTTATTCCAGTGATACCTCCTGAATATACAGTAACAGTGCTGTAGTAGATGGAACAAGCTCACAGTCATGGTAAAACCAGGTCTAATGGTGGATGGACGACGCTTCACCTGGCTAGTTACTTTGGCCAGAAAGATATTGTTGAAGAGCTGTTAAAGAATGGAGTGGAGGTGAACACGCAGAATGATGTCGGGGACACGGCTCTACACATTGCAGCCCTCTGTGGAAGAAAGGAGGTTGTTCTGCTGCTGTTACGGTACGGTGCATGTGCCACGCTACTTAACGGATGTGCTCAGACCCCCAGGGATATCACCGATGATGATGAAGTCATTACTATGCTGGAAGCTGCAGAAAGAAGAGAGGGCAGGAAGCTGGAGGAGAGACTGTTGGATGCAGCAAGAGATGGAGATTGTGGTGCTGTAGCTCAGTTGCTCAGCAAGAACAGACCTCCAGACATCAACTGCAAGGACTCACATGGGGACACAGCGTTACACATCGCAGCCTGCAGGGGGCATAAAGAGTGTGTGGATGTGCTGGTTAAGAGTGGAGCCAGCTTCAGTGCAGTGAACAAAAACGGCCAGTCTGTGTTGGACGTTGCCAAAGATGATCAAACGAGGTTCTTTCTGGAGAAATGTCaagaaaatACTACATGTATCACAGCTAGAAAGTTTGAAGGACTCCTGTGGAAGAAGTCAGATTTTCTGAGCTGGAACTCCCTTTGGGTTGTTCTGGAGAAAGGGACTGTGAGCTGGTACTGTAATCAGTCTGATGCAGCGTGCGGAGATCGTAGGCAGGGCTGTAAGCCTCTTATGAAGGCTCAGTGTGTGGTAAAAGCCTGGGAtaaatactttttcacactCAAGTGCTGTGACGGCAGTGTGCATCACTTTAAAGTGTCCTCTAGATGCTCTGAGCCAGAAATCACCAGGAAAAAATGGGTGGATGCCATGGAGGAGCATGCTGTGTACAGTGCCCTCTGTGGAAGCCCAGACAAAACACCTGTACAGGAAGGAGAACAGGAAGTGGCTAAAGAAGCAATGGACCTGGGAGATTTTCTGTCACACTCTCTTCAGGCAGCTGAAAGTTACCAGAGGATGCTGGAGTCTCAGGTGGCCATGTTTGTCTCTATGGTCAAGAATGAGGACAACAATGatataaCAGTTCCTGAGCTCCTCAAGGCCAAAGAAATATGTGAGCTGTGCAGTGAGACGAGTTCAGTGTTGAGACACTGTGTGGATCTCCTGTCCCAGCGTGAAGAGGTGTGGAGTGTGAAGTTAGAACAGGAAGTAGAAAAGAACAAGCTCCTGTCTGAGGCTCTGCAGAAGTTGGCAACAGAGCATCACCAGCTCAAGCTGAACCTTTCTACTGGCAGAAAGTCGCCGACTCTGAGTGCATTCACAGAGGATGAATTTTATGACGCTGTCTCTGGTGAGCGAGCTGCCTGGCTGCCTCTTCTGTTGGAACCGGATCCCTCAGGTGGGATTTCTCAGGTGTGCCAGAAGAACAGACGGAGGGAGGGAATAAGGGATATAGGGAGCGAGCAAAGGAGGGACCAAAGGAAGGGAGGGTTATGTGACCCGGTGTGCAGTAACTACGTTACTGACACAGCTGCTCATCTACACGCAACAGAAGCTCACACTCCTGCCAGCATGTCTGGGGAGGAGAACCATGGAGACAAGACCCACCATAATGGTGTGAAGAAACACAGAACGTCTCTTCCTGCTCCAATGTTCTCAAGAAATGACGTGAGCATCTGGAGCATCCTCAAGAAATGTATTGGGATGGAACTGTCGAAAATCGCCATGCCAGTCATCTTCAACGAGCCTCTGAGTTTCCTGCAGCGTCTCACAGAATATATGGAGCACACGTATCTCATCCACCAAGCCAACACCTCCACAGACTCCATCCAGAGGATGAAGTGTGTGGCTGCATTTGCCGTCTCCGCTGTGGCATCACAGTGGGAGAGGACCGGAAAGCCCTTTAACCCACTGCTGGGAGAAACATATGAGCTAATCAGAGAGGATCTGGGTTTTAGATGGATGTCAGAGCAGGTGAGCCACCACCCACCTGTTAGTGCATTCCATGCCGAAGGCCTAAAtgatgacttcctgtttcatggCTCCATCTACCCTAAACTCAAGTTCTGGGGAAAGAGTGTAGAGGCAGAGCCTCGTGGAATCATCACTCTAGAGCTCCCCAAACACAAGGAAGCATACACTTGGACCAATCCTACATGCTGCGTCCATAACATCATTGTAGGTCAGCTGTGGATTGAACAGTACGGCAATGTGGAAGTTACTAACCATAAAACTGGTGAAAGGTGCAGCCTGACATTCAAGTCATGTGGCCTCTTTGGCAAAGAGCTACACAAGGTGGAGGGTTACATACTTGATAAAAGtaaaaagaaaatctgcGCCATTTACGGCAAATGGACTGAATGTCTGTACACAGTGGATCCAGCTGCGTTTGACCTTCACAAAAAAGCAGATAAGAAAACTGGTGAGGAGAAGAAAGGCAGCAAGCAGGGCAATGTGGATGAGGAGGCTGAGGAGATGCCCCTTCCTGAGGCCGAAACTGTGCAGGTCATCCCGGGCAGTGAACTCATCTGGAGGATATCACCCAGACCTGAAAACTCAGCTCAGTACTACGCCTTCTCCACATTCGCTATGCAACTAAATGAGCTGGAGGAAGACATGAAGGAGAATCTCCCTATTACAGACTGCCGCCTCCGGCCTGACATCCGTGCCCTGGAGAACGGAGACATAGATTTGGCCAGCGCTGAGAAGAAGAGAgtggaggaaaaacagagagtGGCGCGGAAAAACCGTTCCAAATCCAATGACGAGTGGAAGACGAGGTGGTTCCACCAAGGAACAAACCCACACAATGGAGGACAAGACTGGCTTTACTCTGGTGGCTACTGGAGCAGGAACTACTCCCAACTACCTGACATATACTAACCTCCAACCCTCAGACCTCTGCCCAGAAAGGGACTGCTGAAGAGAAACCATGCATGTTCACAATTAACTTCAGTTCATGCAGAGTGTCAATTATTTATACAGCCACAAGCTGGTTTTATGTTTACCACCATCTTATAAACACTCAAGCATGAGGAGGTGGAACATGGCTGTTATTCTTaaatatgcagtgtgtgaggtgaAGTTTGTTTGTCCAGAGACTTGCATTGcaactttaaataatttatatagaTATTATAGAGTTTCAATTTCAATAGATGTAGCGAGGAAccttgtaaatataaatagaacATAGATGATTATCTGTGGAGACTTGAATTTgctgaaaacaaacacagtctTCTTTAGATGGCTAAAACTTACCTCATAATCTTAGTAGCATATTAAATTTGTTGTGAATAAAGACAAATGACGTGTTATGGTAAGTTAATGAAGCCTAGTTTTTTTGGGCTACACTTAATCCTTGGCTAAATAGATAAACAAATCTCTTTAGCCCAGTATTAGGTTTAATATGGGATTCAACAAAGcattttgtttgtataaatattatttatttaattatatccTGTAGTTAATTGTTTGTGGCTATTGAGAACCTCTTGAACGTATAAATGGAAAAACGTGTTTAGCTTGTAGATGGACCAATCAGAAATCATTTGGactttggatgtttttgttgaATTGTTGTAGATTTAAGAGtgaaattcaaatatttatagaaTCAAATGACAGAAACACAGTCAGTTGTTCAACTTCGAACACTCATTACAACAAAAAGAACCATTAcgtaatgatatatatatatatatatatatatatat

Function

symbol description
osbpl1a Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Used to study visceral heterotaxy. Orthologous to human OSBPL1A (oxysterol binding protein like 1A).

NR:

description
PREDICTED: oxysterol-binding protein-related protein 1

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913884.2 True 3879 mRNA 0.45 28 7743431 7786176

Neighbor

gene id symbol gene type direction distance location
LOC113526517 znf521 coding upstream 68007 7543681 ~ 7675424 (+)
ss18 ss18 coding upstream 212756 7482228 ~ 7530675 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding upstream 301177 7423560 ~ 7442254 (+)
LOC113526768 aqp4 coding upstream 337813 7396810 ~ 7405618 (+)
LOC113526581 LOC108267314,LOC102787731 coding upstream 408514 7237070 ~ 7334917 (+)
LOC113526772 ttc39c coding downstream 4651 7790827 ~ 7810568 (+)
cacna1eb LOC108267309 coding downstream 151338 7937514 ~ 8008440 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding downstream 225794 8011970 ~ 8014519 (+)
abcf3 abcf3 coding downstream 230237 8016413 ~ 8031250 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 247885 8034061 ~ 8053897 (+)
G60804 NA non-coding upstream 41333 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 76212 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 133241 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 257280 7485766 ~ 7486151 (+)
G60722 NA non-coding upstream 512506 7230651 ~ 7230925 (+)
G60931 NA non-coding downstream 38 7786214 ~ 7786635 (+)
G61096 NA non-coding downstream 323302 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 331532 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 431918 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 505752 8291928 ~ 8326744 (+)
LOC113547228 NA other upstream 1039085 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1146830 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1599629 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2147206 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2351602 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 269880 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 909176 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 938369 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 1108294 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1972284 9758460 ~ 9774049 (+)

Expression


Co-expression Network