polr2d (polr2d,LOC107671669,LOC107705117,LOC106612892)


Basic Information

Item Value
gene id polr2d
gene name polr2d,LOC107671669,LOC107705117,LOC106612892
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8011970 ~ 8014519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914074.2
GTCGTCCCGGAAGCGGAAATGCAGTGACTAGTAGTGCTTTGTGCGGCAATGAAATAACGCGCGCCTTGTGTACAAACGATTATACGTTCTCTGTTAACTATGTagctaaatatttatattaaaaataattttgtttgcTGTAGTCTGGTTTCATTGTAGCGTGTTGGTTTAATTTTACAGCTAAAAAGTTATCAGTGGTCGGTTTAAAGGCGAGTGTAAACACCGTCATGGCGGCTGCAGGAGCAACGAACGTGGGCGATATTGAAGAAGACGCCTCGCAGCTGTCTTTCCCCAAAGAGTTTGAAAATGCTGAGACTCTCCTGAACTCTGAGGTCCACATGCTCCTGGAGCACCGCAAACAGCAGAACGAGAGCGCTGAAGATGAACAGGAGCTCTCCGAGGTCTTCATGAAGACGCTGAACTACACGGCCCGCTTCAGCCGCTTCAAGAACCGGGAGACCATCGCCAGCGTGCGCAGTTTACTCTTGCAGAAGAAGCTACATAAATTCGAGCTGGCGAGTTTGGCCAATCTGTGTCCTGAAGCTGCAGAAGAAGCGAAAGCACTCATTCCCAGCTTGGAAGGTCGATTCGAGGATGAAGAGCTGCAGCAGATTCTGGATGATATTCAGACCAAAAGAAGCTTTCAGTATTGATTTCAAACCTGTGCAGTGCACGaggacttttttaaataatgttctcCATTCCATATATTTTGGTACTCTCTAAATCTCCATTCATTGTAGATGCATTGTTTGtgactataaaaataaatctgatgtgtttgtaaa

Function

symbol description
polr2d Predicted to enable translation initiation factor binding activity. Predicted to be involved in RNA metabolic process; mRNA export from nucleus in response to heat stress; and positive regulation of translational initiation. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Predicted to be active in P-body. Is expressed in several structures, including blastomere; eye; heart; liver; and pleuroperitoneal region. Orthologous to human POLR2D (RNA polymerase II subunit D).

NR:

description
DNA-directed RNA polymerase II subunit RPB4

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03012 RPB4, POLR2D; DNA-directed RNA polymerase II subunit RPB4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914074.2 True 788 mRNA 0.45 4 8011970 8014519

Neighbor

gene id symbol gene type direction distance location
cacna1eb LOC108267309 coding upstream 3530 7937514 ~ 8008440 (+)
LOC113526772 ttc39c coding upstream 201402 7790827 ~ 7810568 (+)
LOC113526636 osbpl1a coding upstream 225794 7743431 ~ 7786176 (+)
LOC113526517 znf521 coding upstream 336546 7543681 ~ 7675424 (+)
ss18 ss18 coding upstream 481295 7482228 ~ 7530675 (+)
abcf3 abcf3 coding downstream 1894 8016413 ~ 8031250 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 19542 8034061 ~ 8053897 (+)
LOC113526329 LOC108267642,LOC108436873 coding downstream 70627 8085146 ~ 8101065 (+)
znf830 NA coding downstream 87886 8102405 ~ 8104017 (+)
LOC113526595 LOC108267854,LOC108436868 coding downstream 216661 8231180 ~ 8356530 (+)
G60931 NA non-coding upstream 225335 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 309872 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 344751 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 401780 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 525819 7485766 ~ 7486151 (+)
G61096 NA non-coding downstream 94959 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 103189 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 203575 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 277409 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 280852 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1307624 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1415369 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1868168 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2415745 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2620141 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 41537 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 680833 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 710026 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 879951 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1743941 9758460 ~ 9774049 (+)

Expression


Co-expression Network