LOC113526772 (ttc39c)


Basic Information

Item Value
gene id LOC113526772
gene name ttc39c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7790827 ~ 7810568 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914108.2
CCTCCCTCTAGGTGATGTAAAGTGGTAGAAGTGAAATCTGTACTCTACCGAAACGCGGAAGCTGGACGTGTAAAAGTTGTTTAGTTTTATGGGGTtgttttttacagtgtaatataaTCCGCATGAATTTGAATGACCCCAGCTGCTGCAGCTCGCTGTGTTTACGTGACGCTTGTACTTCCGGTGTGTGCTGAGCAGTTCCTGCTGGTGTCCCGGCCGCTCGCGGGTGCTGTGAGCTCTGTGTTGGTTTAGTGTCAGAAAGTGCAGATGAGTGGGATGCTCTGAGAGTTTGGGGtaaatcatttctctttattGCCCCTGAGGtgattttgttgttgctgtgagCGATGGCGGAGGCTGAAGAAGAGTTTCCTGAGCAGCTCGATGATGCGGAACTTTCACTGCGGGGAATTAACATGTTGCTGAACAACGGCTTTAAAGAGAGCACACAGCTCTTCCACACATACAGGAATTACAGCCCTCTGATGAGCTTTGGTGCGAGCTTTGTGAGTTTTCTGAATGCCATGATGACGTTTGAAGAGGAGAAGATGCAGGTGGCGTGTGAGGACCTGCGGGCCACGGAGAGACTGTGCGAGTGCGACAGCGCCGGCGTGATCGAGACCATCAAGAACAAGATCAAGAAGAATCAGGTggagggtcagaggtcacaggtGACCGTGATCGAGCGGCTGCAGAGGCTCATCATAGTGGCTGACTGTCAGGTTTATCTGGCCGTGCTGTCCTTCGTCAGACAGGAGCTCTCTGGATATATTAAAGCTGGCTGGATCCTTCGTAAGGCCTGGAAAATGTACAATAAGTGCTACAATGAGATCACCCGGTTGCAGGAAGCGTGTCAGAGGAGGTGCTCAGCACCACAGGGGGCACTTTCTTTTGCTCAATCCAAACAGAGTCAGAATGCCTCAATGCCTGATCCCACAGCAGCCCGCTCCAGTGAGTGTCCTGAACCTGAATCCAGTCAGGATTGTTCCCTGGCTCCTGTCTCAGAAGGGTCACGTGCTCCCAATCAGCTTAACGACAGCCACAAAGCGTCCTCCACTCGGCCCAAACACGGCATGAAATCTCAGCCGCGGCTCGATTACAGCGTGACCGCGGAGTCTCTGAGTCGACTCAAGGGTTCAGTCAGCTTCGGCTACGGCCTGTTCCACCTCTGCATCTCTATGGTGCCTCCTCACCTGCTGAGGATCATTAACCTGCTGGGATTCCCTGGCTCACGGCAGGAGGGGCTCAGCGCCCTCACGTACTCCAGCGAAAGTAAGGACATGAAGGCCCCTCTCTCTACacTGGCCCTGCTGTGGTACCACACGGTCGTACAGCCCTTCTTTGCACTGGACGGCACTGAAACAGAGGCAGGACTTCAGGCTGCTAAAGCCATACTTCAGAAGAAAGAAGCTGAATATCCTAACTCCTCACTCTTCATCTTCTTTAAAGGACGAGTGCTGCGGCTCGAGTGTGAGATCAGCAGGGCTTTAATATGCTTTAATAATGCATTGGAACTGGCTTCAGAACAGAGGGAAATCCAGCACATCTGTCTCTACGAGATTGGTTGGTGCAGTATGATCGAGCTGAGCTTCACTGAAGCGTACAGAGCCTTCGAGCGTCTGATGACGGAGTCACGCTGGTCCCAGTGCTACTACTCCTACCTCACTGGAGtgtGTCAGGGAGCTTCAGGTGATCTGGACGGAGCTTGTAGCGTATTGAAAGATGCGGCTCGGCTTTTCAAGAGGAAACACAATCAGATTGAGCAGTTTTCCATGAGGAAGgCTGAAGAGTTAAGGAAGCCCAGACCCACGAAAGAGCGATGTATGATGGCTGCCATCGAGGTTCTGTACCTTTGGAAAGCTCTTCCTAACTGCTCTAACACCAAACTGCAGCTCATGATTGAAGTTCTGCAGCAGATGGATGGCTTGTCGTATTGCGGACTGAAATACCTCCTGATGGGGGCCGTGCACAAAAGTCTAGGGGACAACGCAAACGCAATGCAGTGTTTTCAGATGGCTTTTAGAGATGAAGAAGGGTGTGTCAGTAACTCATACGTACAGCCTTATTCCCTCTATGAGCTGGGATGTGTGCTACTAGAAAACCCtgagtCTACAGCTAAAGGAAGAGCTCTGCTTCTTCAAGCCAAGGAGGACTTCTCGGCGTACGATTTTGAGAACAGGCTCCACGTGCGAATCCACACAGCTTTAGCTTCACTCACAGCAACAGCTCCACAATAACTCCTTTCCGATGTTCTCAGAAATAAGATGTACACGAGCCAGCAAAGAAATCTGAGacagaaggaagaaggaaggagCACAGCCTCAGACTGTTACTGATGATCATGGACTGTTGTTacataaaatgctgttttttttccccgagcgcactttatttttattttagatactCGATTAGAAAAGAGAAACGGTCAGTTTTAATGTAGAGTCCTACGTTGTGAAATATCAGGATGGTGAGTCATTGCTCAGTTACTTTTTGGAAAGTCAAGTCACAAAGCACATGATTTCTGATTTTTGGACTGCGTTATGTTTAAATTAGTGCCTGTGAGCTACTCAAAAGCACGACTAATTTAATTTACAGAGTTTATAAAAATAGGTTTAAATTGTTTAGTTAATGCTGGATATAAGAGATTTAAAATATGcgagtagtttttttttttcttttgattgtGGTCAGTAGTCTGATACCTGGCCATGCATGTGGCCTTCAAGCATTGTACATCACCACATGCTAAAACGCCACTGAACAAAAAACAATATTGCCAAATCGCAACCAATCACACCTCCTAAACTGCAGGTTGTCTTAAAGGTTTAACATTCACTCATGCAGCTAGCAGTTGGGCagctaaactttttttttttttttttgtccacatgCCAAAGTCTAAAAAGTGTCTGCTTAGAGATCCTGATATTATTTGGTTGGTTGTAAATCCTGAATTTTTGTTGTTCTATtaacaaaatctaaaataacAACAGAAAGTAAGTTATTTGGATTGTAAATGTCATGGACGGAAGGTATATCACTTAAGATGTATCACTGATTACTGTTACATTTAAGAGGAAACTGCTCTGACTACTCTGCTACCTGTGGTTAGCTAAAACTATCTAACCAGTATATGCAGAAAGAAAATCAGGCCTTTATTTTGCAGTACAGTAAGTACATATTGTTTTAGGTAAGGATGTGGTAATTAATTGTAAGTAGTTTTAGGTGTGTTTACATATAGAATTTTGAGGTACGTAATAATTTCTGAAAAAATGACCAGGTTTGTACAAGAGCACATGGTGCCACAATGCAATAGTTACTCAGattgtaattattttcatgCAGGACGTAATGATGTGGCGTAATCTTcgattaatatttttataagttgaatattttaagtgtgtagtgaataatgtgaaaaataccAGGTATACTTAAGCAAATAATGCTAAGTAACATTATAGTTGTATCAAACATGCGGAATAGAACACTTGGAGTATTTTTTTCGCATaagttacattattatatacttatatttcCAACTTCCAAAGGATGATCTAAGTATTACAATGTCATTATTGTACCGCAGCACAAAGTACTGTTGTACAAACGGAGTACTTCTCACACTAACTACTGTGTACTTAAAGATCCGGTATGCAAGGTTGTACCAGACATTACTGCATACTGACCTGCTAAATACTACgtagttactgtactgttaAATGAAGTATTACTCAAATGGTATGATTGTGTTCAACTgagtaaacaggaaatgaaattcATGCTAACTGGTAAAATGTTGAACTGCAGTATTAGGACTTTAAAGTGCATAGTTACAGTATGGTCTTTACAGATGAAAATATTAACCTGGTGGAGGCAgctacagtgtttaaaaaaaaaaaaaaagtttaaaaaaagtgtttttggtTTCACCATGCTCAGCAGTAGCATGTACTTTATTATATCAATGCTGTTCTTGACCTTCactttggaaaaataaacaatggaCATGTTGAGTAAAA
>XM_026914109.2
CCTCCCTCTAGGTGATGTAAAGTGGTAGAAGTGAAATCTGTACTCTACCGAAACGCGGAAGCTGGACGTGTAAAAGTTGTTTAGTTTTATGGGGTtgttttttacagtgtaatataaTCCGCATGAATTTGAATGACCCCAGCTGCTGCAGCTCGCTGTGTTTACGTGACGCTTGTACTTCCGGTGTGTGCTGAGCAGTTCCTGCTGGTGTCCCGGCCGCTCGCGGGTGCTGTGAGCTCTGTGTTGGTTTAGTGTCAGAAAGTGCAGATGAGTGGGATGCTCTGAGAGTTTGGGGtaaatcatttctctttattGCCCCTGAGGtgattttgttgttgctgtgagCGATGGCGGAGGCTGAAGAAGAGTTTCCTGAGCAGCTCGATGATGCGGAACTTTCACTGCGGGGAATTAACATGTTGCTGAACAACGGCTTTAAAGAGAGCACACAGCTCTTCCACACATACAGGAATTACAGCCCTCTGATGAGCTTTGGTGCGAGCTTTGTGAGTTTTCTGAATGCCATGATGACGTTTGAAGAGGAGAAGATGCAGGTGGCGTGTGAGGACCTGCGGGCCACGGAGAGACTGTGCGAGTGCGACAGCGCCGGCGTGATCGAGACCATCAAGAACAAGATCAAGAAGAATGTggagggtcagaggtcacaggtGACCGTGATCGAGCGGCTGCAGAGGCTCATCATAGTGGCTGACTGTCAGGTTTATCTGGCCGTGCTGTCCTTCGTCAGACAGGAGCTCTCTGGATATATTAAAGCTGGCTGGATCCTTCGTAAGGCCTGGAAAATGTACAATAAGTGCTACAATGAGATCACCCGGTTGCAGGAAGCGTGTCAGAGGAGGTGCTCAGCACCACAGGGGGCACTTTCTTTTGCTCAATCCAAACAGAGTCAGAATGCCTCAATGCCTGATCCCACAGCAGCCCGCTCCAGTGAGTGTCCTGAACCTGAATCCAGTCAGGATTGTTCCCTGGCTCCTGTCTCAGAAGGGTCACGTGCTCCCAATCAGCTTAACGACAGCCACAAAGCGTCCTCCACTCGGCCCAAACACGGCATGAAATCTCAGCCGCGGCTCGATTACAGCGTGACCGCGGAGTCTCTGAGTCGACTCAAGGGTTCAGTCAGCTTCGGCTACGGCCTGTTCCACCTCTGCATCTCTATGGTGCCTCCTCACCTGCTGAGGATCATTAACCTGCTGGGATTCCCTGGCTCACGGCAGGAGGGGCTCAGCGCCCTCACGTACTCCAGCGAAAGTAAGGACATGAAGGCCCCTCTCTCTACacTGGCCCTGCTGTGGTACCACACGGTCGTACAGCCCTTCTTTGCACTGGACGGCACTGAAACAGAGGCAGGACTTCAGGCTGCTAAAGCCATACTTCAGAAGAAAGAAGCTGAATATCCTAACTCCTCACTCTTCATCTTCTTTAAAGGACGAGTGCTGCGGCTCGAGTGTGAGATCAGCAGGGCTTTAATATGCTTTAATAATGCATTGGAACTGGCTTCAGAACAGAGGGAAATCCAGCACATCTGTCTCTACGAGATTGGTTGGTGCAGTATGATCGAGCTGAGCTTCACTGAAGCGTACAGAGCCTTCGAGCGTCTGATGACGGAGTCACGCTGGTCCCAGTGCTACTACTCCTACCTCACTGGAGtgtGTCAGGGAGCTTCAGGTGATCTGGACGGAGCTTGTAGCGTATTGAAAGATGCGGCTCGGCTTTTCAAGAGGAAACACAATCAGATTGAGCAGTTTTCCATGAGGAAGgCTGAAGAGTTAAGGAAGCCCAGACCCACGAAAGAGCGATGTATGATGGCTGCCATCGAGGTTCTGTACCTTTGGAAAGCTCTTCCTAACTGCTCTAACACCAAACTGCAGCTCATGATTGAAGTTCTGCAGCAGATGGATGGCTTGTCGTATTGCGGACTGAAATACCTCCTGATGGGGGCCGTGCACAAAAGTCTAGGGGACAACGCAAACGCAATGCAGTGTTTTCAGATGGCTTTTAGAGATGAAGAAGGGTGTGTCAGTAACTCATACGTACAGCCTTATTCCCTCTATGAGCTGGGATGTGTGCTACTAGAAAACCCtgagtCTACAGCTAAAGGAAGAGCTCTGCTTCTTCAAGCCAAGGAGGACTTCTCGGCGTACGATTTTGAGAACAGGCTCCACGTGCGAATCCACACAGCTTTAGCTTCACTCACAGCAACAGCTCCACAATAACTCCTTTCCGATGTTCTCAGAAATAAGATGTACACGAGCCAGCAAAGAAATCTGAGacagaaggaagaaggaaggagCACAGCCTCAGACTGTTACTGATGATCATGGACTGTTGTTacataaaatgctgttttttttccccgagcgcactttatttttattttagatactCGATTAGAAAAGAGAAACGGTCAGTTTTAATGTAGAGTCCTACGTTGTGAAATATCAGGATGGTGAGTCATTGCTCAGTTACTTTTTGGAAAGTCAAGTCACAAAGCACATGATTTCTGATTTTTGGACTGCGTTATGTTTAAATTAGTGCCTGTGAGCTACTCAAAAGCACGACTAATTTAATTTACAGAGTTTATAAAAATAGGTTTAAATTGTTTAGTTAATGCTGGATATAAGAGATTTAAAATATGcgagtagtttttttttttcttttgattgtGGTCAGTAGTCTGATACCTGGCCATGCATGTGGCCTTCAAGCATTGTACATCACCACATGCTAAAACGCCACTGAACAAAAAACAATATTGCCAAATCGCAACCAATCACACCTCCTAAACTGCAGGTTGTCTTAAAGGTTTAACATTCACTCATGCAGCTAGCAGTTGGGCagctaaactttttttttttttttttgtccacatgCCAAAGTCTAAAAAGTGTCTGCTTAGAGATCCTGATATTATTTGGTTGGTTGTAAATCCTGAATTTTTGTTGTTCTATtaacaaaatctaaaataacAACAGAAAGTAAGTTATTTGGATTGTAAATGTCATGGACGGAAGGTATATCACTTAAGATGTATCACTGATTACTGTTACATTTAAGAGGAAACTGCTCTGACTACTCTGCTACCTGTGGTTAGCTAAAACTATCTAACCAGTATATGCAGAAAGAAAATCAGGCCTTTATTTTGCAGTACAGTAAGTACATATTGTTTTAGGTAAGGATGTGGTAATTAATTGTAAGTAGTTTTAGGTGTGTTTACATATAGAATTTTGAGGTACGTAATAATTTCTGAAAAAATGACCAGGTTTGTACAAGAGCACATGGTGCCACAATGCAATAGTTACTCAGattgtaattattttcatgCAGGACGTAATGATGTGGCGTAATCTTcgattaatatttttataagttgaatattttaagtgtgtagtgaataatgtgaaaaataccAGGTATACTTAAGCAAATAATGCTAAGTAACATTATAGTTGTATCAAACATGCGGAATAGAACACTTGGAGTATTTTTTTCGCATaagttacattattatatacttatatttcCAACTTCCAAAGGATGATCTAAGTATTACAATGTCATTATTGTACCGCAGCACAAAGTACTGTTGTACAAACGGAGTACTTCTCACACTAACTACTGTGTACTTAAAGATCCGGTATGCAAGGTTGTACCAGACATTACTGCATACTGACCTGCTAAATACTACgtagttactgtactgttaAATGAAGTATTACTCAAATGGTATGATTGTGTTCAACTgagtaaacaggaaatgaaattcATGCTAACTGGTAAAATGTTGAACTGCAGTATTAGGACTTTAAAGTGCATAGTTACAGTATGGTCTTTACAGATGAAAATATTAACCTGGTGGAGGCAgctacagtgtttaaaaaaaaaaaaaaagtttaaaaaaagtgtttttggtTTCACCATGCTCAGCAGTAGCATGTACTTTATTATATCAATGCTGTTCTTGACCTTCactttggaaaaataaacaatggaCATGTTGAGTAAAA

Function

symbol description
ttc39c Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Is expressed in nervous system and trigeminal placode. Orthologous to human TTC39C (tetratricopeptide repeat domain 39C).

NR:

description
PREDICTED: tetratricopeptide repeat protein 39C isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914108.2 True 4028 mRNA 0.43 14 7790827 7810568
XM_026914109.2 False 4025 mRNA 0.43 14 7790827 7810568

Neighbor

gene id symbol gene type direction distance location
LOC113526636 osbpl1a coding upstream 4651 7743431 ~ 7786176 (+)
LOC113526517 znf521 coding upstream 115403 7543681 ~ 7675424 (+)
ss18 ss18 coding upstream 260152 7482228 ~ 7530675 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding upstream 348573 7423560 ~ 7442254 (+)
LOC113526768 aqp4 coding upstream 385209 7396810 ~ 7405618 (+)
cacna1eb LOC108267309 coding downstream 126946 7937514 ~ 8008440 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding downstream 201402 8011970 ~ 8014519 (+)
abcf3 abcf3 coding downstream 205845 8016413 ~ 8031250 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 223493 8034061 ~ 8053897 (+)
LOC113526329 LOC108267642,LOC108436873 coding downstream 274578 8085146 ~ 8101065 (+)
G60931 NA non-coding upstream 4192 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 88729 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 123608 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 180637 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 304676 7485766 ~ 7486151 (+)
G61096 NA non-coding downstream 298910 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 307140 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 407526 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 481360 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 484803 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1086481 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1194226 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1647025 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2194602 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2398998 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 245488 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 884784 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 913977 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 1083902 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1947892 9758460 ~ 9774049 (+)

Expression


Co-expression Network