LOC113539763 (LOC108267503,LOC108440269)


Basic Information

Item Value
gene id LOC113539763
gene name LOC108267503,LOC108440269
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9724729 ~ 9746048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935803.2
GTTTCCTGTCTTCTGTCAGGGTCTCATTAGTGAAGTACGCCTCgcaaaaggaaaccagtgtGACATGCGAAAGCAGCAGAAAACAAAGAAGTCTTCAGAGAGGTGTTATTTCTCCCTTGCCAAGGTGAGAGGTAATGGCTGCCGGGGTGGATCAGGATTCTCTGGACTCTGGCATTTCCAgTTGTTTTTCGCAGATGTCTGTGGGGACAGAATCTGTCCCTGAAGGGCCCATTTGCATCCACTTCCAAATGGGTCTATTGAAAGAAAGGGTCAGCGTGCCCAAGGGCCAGCTAAGTTTCAAAAGCGCCAAGAAAATAGCAGCAGAAATCATCGAGAAGAAGGCCCCTGATTGGAGTATAATAGGTCTTGGTGAGAAGCTGCTGCTTTTCCGACATGATCCCATGTCTGAGCAGCTCCTCCACAGACTCTCAGAGCAACACTATCTGCACGACGGAGACCTGGTGGAGGTGGTACTTGCTGCTTCTGCGTCACTGACTGAGGTGAAATTCCGCCCACATTCTTTGGTGGTCCAGTCTTATCGCACACCGACATTTTGTTACCACTGTGGCGAGATGCTTTGGGGGCTCATCCGACAGGGCTTAAAATGTGAAGGTTGTGGTTTAGATTTCCATAAACGCTGTGCACTGATGTTGCCTAATGACTGCTCGCGTGTGTACCGGCCATGTGGTCCCAGTCTGTCGCTGTTCCCTCCCTCGCGTCCCCGTTCCACCTCCCTCAGCAACCACACTGGGGGCAGCCTGGAGGAGATCAGTCTCTCCAAGCCATCGCGCTCTCGACCCCCGTCATGGGCAGACAGGCCCGTGTGGTTAGGGGTGTGTGATGGGGCTAGAGGTGGCAGACCCCTGGTGCCACACACCTTCCACATCCACACATACACCAAGCCCACAATGTGTCAGCACTGTCACCGGCTGCTGAAGGGTCTGTTCCGCCAAGGCCTGCAGTGCTCCGACTGCAAGTTTAACTGTCATCGCCGCTGTGAGTCTCAGGTTCCACCGGACTGTAGAGGGGAACGAGCCAATGGAGAAGAGAGCAACTCAAACCAGGAGCCTGAATCTGAGGAGGACTTAGCTGTGGAAACAGTCAATGCTATTTATGAAGAGTATCCCTTTAAAGTGCGCCCTGACGTGGAGGAGGAGTCTGCAAAGCAACCACCAATCAGTCCGTGTTTCAGCAGTAATATCCCCTTGATGAGGGTGGTGCAGTCAGTTAAACAGAGTAAGAGGAGGTCCAGTGGAATACTGAAGAAAGGCTGGCTGTTACACCATACCAATGTAGATACACTGAGGAAAAGGCACTACTGGATTCTGGATGGGAAAAGCATCACACTGTACCAGAACGAGAACAGCAGCAAGTACTACAAGGAGCTGCCTCTGTCTGAAGTGCTGCAGGTCCGAGGCTCGTCTCAGCTCACTGTTCCTGTGCAGTCGGATGGCGCTGGTCACTCGTTTGAGCTGCTGACGAGTTCTGTGGTCTTCTGTGTGTTCGCAAACACAGAAGGAGCAGCCTGGGAGTCGGCCATCAAACTCGCGCTCATGCCTTTACAGAGTGTCGAGCTCTGCACAGCAGGGCCTGCAgATGATCGAGCCATCAGTGAAGAAATCCAGgatATTAGTTCGCTGTATCAGGTTTTCTCTGATGAAGTGTTGGGATCAGGACAGTTTGGAGTGGTGTACGGAGgtaCTCACAGGCAGACGGGTCGACCGGTGGCCATTAAGGTCATCGATAAAACTCGCTTCCCGGCCAagcaggagagacagagcaaaaatGAGGTGGCCATACTGCAGagtCTGTCTCATCCTGGAGTCATTGTACTTGAAGGCATGTTCGAGACGCCTGAGCGCACTTTTGTCGTCATGGAGAAGCTCCATAGTGACATGCTGGAGATGATTCTGTCCAATGAGAACGGACGACTTCCTGAACGCATCACACGCTTCCTTGTTATGCAGATTTTGGAGGCTCTGCGCTACCTGCACATGAGACACATCGCTCACTGTGACCTTAAACCTGAGAACGTGCTGCTCTCCTCTCCAGATCCTTTGCCTCAGGTGAAACTGTGTGACTTTGGTTTTGCACGGATCATCGGTGAGAAGTCTTTCCGGAGCTCGGTGGTAGGGACGCCGGCGTATCTGGCCCCCGAGGTGATCAGTAGCCACGGCTATAACCGCTCGCTGGACATGTGGGCTGTAGGGGTGATCCTGTATGTCAGCCTGAGCGGCACGTTTCCCTTCAACGAGGACGAAGACATTCACCAGCAGATCACTAACGCTGCCTTCATGTACCCTCGCCACCTGTGGGCCCTCATTTCTCTCGAGGCGGTGAGTCTGATTAATAACCTGCTGCAGGTGGTGGTGCGGCGCAGGTTCAGTGTGGGGAAAGCGATGGGACACCCCTGGCTCCAGaacTTCCAGCTGTGGTGTGACCTGCGTCAGTTTGAGCAGCGTCTGGGTCGCCGGTACCTCACTCACGAGTCGGATGATGAGCTCTGGAGACGTCACGCTCAGGAGAAAGGCCTCAGTCTCCCTCCTCATCTACAGACAGAACAGGGACActgacacgcacacacgcacacacacacacgcacacacacacacatacactggaCACCTCGGTTTAATCATGAGACCTGTGACTGTGGCGTGTGGACTGTACAGAATCCAGTACTCTGATCTGATGTACATTTTATGCACACTgacaatttttaataaaatgatacaAAACTCTGGA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase D3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935803.2 True 2745 mRNA 0.53 19 9724729 9746048

Neighbor

gene id symbol gene type direction distance location
LOC113540385 klc2,LOC102775952,LOC107728029 coding upstream 768 9712583 ~ 9723961 (+)
LOC113539871 LOC108440271 coding upstream 16793 9649304 ~ 9707936 (+)
sf3b2 sf3b2,LOC107692835 coding upstream 82819 9627748 ~ 9641910 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding upstream 290125 9428725 ~ 9434604 (+)
LOC113540089 NA coding upstream 391947 9329335 ~ 9332782 (+)
LOC113540688 ccs coding downstream 2400 9748448 ~ 9757655 (+)
actn3b actn3,LOC108440266 coding downstream 30448 9776496 ~ 9805341 (+)
trnas-gcu NA coding downstream 166349 9912397 ~ 9912478 (+)
nit1 nit1 coding downstream 173812 9919860 ~ 9925854 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding downstream 181273 9927321 ~ 9966832 (+)
G61638 NA non-coding upstream 131986 9578364 ~ 9592743 (+)
G61600 NA non-coding upstream 268569 9449043 ~ 9456160 (+)
LOC113540712 NA non-coding upstream 375015 9349502 ~ 9349714 (+)
LOC117597235 NA non-coding upstream 381615 9342902 ~ 9343114 (+)
LOC117597225 NA non-coding upstream 382757 9341759 ~ 9341972 (+)
G61689 NA non-coding downstream 135020 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding downstream 168187 9914235 ~ 9918783 (+)
LOC113540370 NA non-coding downstream 278537 10024585 ~ 10096068 (+)
G61735 NA non-coding downstream 300544 10046592 ~ 10047551 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding downstream 419481 10165529 ~ 10297564 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 354244 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other upstream 828000 8894470 ~ 8896729 (+)
LOC117597156 NA other upstream 1000289 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 1661890 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 3020383 6684336 ~ 6704346 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 12412 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 61273 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 114846 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 421798 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 728720 10474768 ~ 10486042 (+)

Expression


Co-expression Network