LOC113539767 (t185a,tmem185a)


Basic Information

Item Value
gene id LOC113539767
gene name t185a,tmem185a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13891113 ~ 13898505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935809.2
GTCACTAGCACGAACTTTTAACTTGTCTGATTTACCCGTAATGCTATTGTACCGGAAACGGAAGTAGACATTCAAAACAAACCTGCTTGCTAACAATCCAAAGAAAAATCACCGGAGATTGTTGTGTCATTCTTGTATATTGTAAGCCATGGTGTCGTAGTGAAGGCTGgagattattttttatcatgAATCTAAGAGGACTGTTCCAGGATTTTAATCCCAGCAAATTCCTCATATATGCCTCCCTTTTGCTGTTCTCCATCTTGCTGGCTCTGAAGCTGGATGGAGTTATCCAGTGGAGTTACTGGGCAGTGTTCACTCCCATCTGGCTCTGGAAGCTCATGGTTGTCATTGGAGCCTCTGTAGGGACCGGAGTGTGGGCCAGTAACCCGCGCTACAGAGCGGAGGGTGAGACTCATGTGGAATTCAAAGCCATGTTGATAGCAGTGACCATTCACATTCTGCTGCTGATGTTTGAAGTACTGGTGTGTGACAGAATCGAGAGGGGCTCCTACTTCTGGCTGCTTGTGTTCATGCCCCTCTTCTTCGCTTCGCCTCTCTCAGTGGCTGCTTGTGTGTGGGGGTTCCGCCATGACCGCTCACTGGAGtTGGAGATAATGTGCTCGGTCAACATTCTCCAGTTTATTTTCATTGCCTTGCGACTGGACAAGATCATCACCTGGGACTGGCTGGTGGTGTGTGTGCCACTGTGGATCCTCATGTCTTTCCTGTGTCTGGTCGTGCTCTACTATATAATTTGGTCCATGCTCTTCCTGCGCTCTATGGACATCATTGCCGAGCAGCGTCGCACTTACGTCACCCTGGCTGTGAGCTGGATAACCATTGTGGTGCCACTCCTAATCTTCGAGATCTTGCTGGTTCATAAACTGGATGGACATAACAAATTGAGTTATGTGTCTCTCTTTGTGCCTTTATGGGTCTCACTGGTCACTCTCATGGCCAGCACTTTTGGGCAGAAAGGCGGGAATCACTGGTGGTTTGGCATCCGCAAAGACTTCTGCCATTTCCTTCTGGAGCTCTTCCCTCTCCTACGAGAGTATGGCAACATCTCCTACAACCTGCAGCATGATGACTCTGACAACTTCGAGGAGACACGTGCTGTCCCCGAACCTTTGAAAGTTGCCCCTATGTTCTTCCACAAAGGAGTAGAGATCATGCCATTCCCTGGGAAATACTTTGACCCTCCCCCCAAACTGTCTATAGACATACCTGACTGAATGTAACGGCAGTCTTTACAAGAACTGTACAGACGTTCCAGGAGGAGGCCAGGAACCAAttcttgctttgttttgtttttttgtttttttgttttttttttttttggttttttttataattcagGTATACTTGATGATGATATGTCAAGGATAAAGTGGGAAATGTAAAGAGCTGGTATCAGTATTGGAGCCATCAATCTGAAGATGGTGATTCAACTGCATAGTGTGGAATTTTAGATTAGCTTATAGTGAATTATAATATTCCATAAAgcacttttcttttgttctaaataaaattctcaggcaattttaaaatataaaactgctAAATCCAGCTCCCCAGTCTACTTTCAGCACAGGTCTGCTGACTGAGAGACTAAAgcgtgcatttttttttttttttttttttttttttgtctgtattctTTTGGTGGCATTTCTGTATTCagcatattttttaaagaaatgtttggtGAGATTTTATACACTGAATTACATTTCCTTAAGAATTATAATGGACTTATTGTGAGGTCTGGGATTTATACACCTACTACTGTTCCCTAACCTGTGacaatttgtttatatataatcaaGTCCTTGTTTTCCACATTTCTGAGGTAATTAAAGCCAGCTGTAATGTTAAAATGAGGCTAACctgagacagatggacagtaTTTCTTTTCAGCTGTAAATCATTCATGCAACAGCTATGAAAGCACTTGATATCTATGACTGATATTGGTGCTtgctttcatgtgtcttgaGCATATATACAGCACATCTGCGAAGCAGCCCCTTTACTCAAACTTCAATACTGACTGGTGACTTTAAAAAACATATCAAACCCAACAGACTACAGGACACAGAGATGGTCTGAGCCTCGTCCTAACCATGCTACTGTCTTTTGCCTGGACCATCTCTGAATCTATTCTGTTAGGTCTACTgaacatgaaacatttttaatgatcaTTCTTTACTCAAGTTTTTATCAGTAAACCAACCGATTAAAAGAGACATGTTTGGGTAATGTAAAAAGCTATGCATGTGCATATTAACACTGTTGCATGTAACTGAACAGTACACGATTTCTGTAAGTAATATTCTTCTTTTGAGAGTaagattttattactttataatcCTTGacttgtctgtgtttgtaaAATGATTGGGCCCTAACTGCAAAAgcagttttgattttaaaatgggTCTGAACAGCTGAACTAATTACCTAATAAATCAGAGTAACACAGAA

Function

symbol description
tmem185a Predicted to be integral component of membrane. Predicted to be active in dendrite.

NR:

description
transmembrane protein 185a

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935809.2 True 2490 mRNA 0.41 7 13891113 13898505

Neighbor

gene id symbol gene type direction distance location
ankrd46b ankrd46,ankrd46b,LOC108428588 coding upstream 1529 13882312 ~ 13889584 (+)
col4a6 col4a6,LOC108267418 coding upstream 10439 13798180 ~ 13880674 (+)
LOC113540276 LOC108267420 coding upstream 152203 13724314 ~ 13738910 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding upstream 191423 13692777 ~ 13699690 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 206514 13647181 ~ 13684599 (+)
m1ap m1ap coding downstream 75491 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 136702 14035207 ~ 14039607 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding downstream 165989 14064494 ~ 14080036 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding downstream 193989 14092494 ~ 14151289 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding downstream 331468 14229973 ~ 14253890 (+)
G64025 NA non-coding upstream 131362 13755544 ~ 13759751 (+)
G63973 NA non-coding upstream 143041 13695649 ~ 13748072 (+)
G63976 NA non-coding upstream 318280 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 386394 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 423387 13459362 ~ 13467726 (+)
G64049 NA non-coding downstream 4936 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 113593 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 114714 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 118781 14017286 ~ 14017669 (+)
G64095 NA non-coding downstream 143463 14041968 ~ 14042414 (+)
gc2 LOC108267421,LOC108412585 other upstream 171659 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 328847 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 416076 13468552 ~ 13475037 (+)
G63903 NA other upstream 472417 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 605279 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 357239 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 733525 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2124689 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2411708 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2469451 16367956 ~ 16370957 (+)

Expression


Co-expression Network