LOC113539773 (LOC108267568)


Basic Information

Item Value
gene id LOC113539773
gene name LOC108267568
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19867151 ~ 19872149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935817.2
TTTTATTTCCGCTCATGCTgtggacttttattttgaagctCATCTCTCCTCTGTGTATCACTAGCCCCCTCTCTGACTGACTTCACACTATTTACACTGACGGGATGAGTGCTGTCTTGCTGTCCCTGGCTTTTCATCCCGGAACAAGGCATCAGTGGTACTGAGAGAACTTTGATCAGGGCATCTTGATCTTGAGGCGCAGGGTATCGGACACACTCTTGTGGCTTGCTGCAGCAGGAGAAGGCTGGACGATGCAGACGCGTCGCTCCTCGTCGGCGCTGGCTGTTAGCGGCGAGGTGTCGCTTTCTTTCCAGGATGAGCTCGCTGCCACCATCCACCGAGCCTTCGAGGTGGCGGTGGAGATCGCGGTGGTGGAGGTGAGTAAGTTAGTGAGCCAGGCGCTGGGGGATGTGCGCGATCAGATGCAGGAGACGCTGAGGGAGAACACGTTCCTCAAGACGCGGCTGCAGTCCGCCGAGCTCGAGCTGGACACCGTGAGGAAAGGCAGAAAGAGCAAGAGCCCGGCTGCAGCCGATGATGATCAGCCGCAGAGTGATTTCTCTCAGCGACACGAAAGCCAGACCAAGTGTGAGAGCCGATCCACGGGGAGAGCAGACAGCCCAACAGCTCAGGAGACTGAGAAAATGTGCCTAAATGTGGACGAGTCTTTCTGTGAAATCCGTGAGGATGGAAGCGTTCGGTCACGTGACTTGGGCTCAGCATCCCTAGTGCAGTGCCGTGAGCAGAAGTCAgGTCCACCACATGAATCTCTTATTCCAGAAAATGAACAGATGGCACAGCACAGCCAAGATATACATGGTGACCAGATTCCACCATCTGTTGAGCAGCCAGTCTGCAAGAAAGAGGAGAACCTAGAACCACAGCTGGGTGATGCTTCTGGAGAAGATGATGGGGATGATGAGAATAATCTGGATGAAGACGATGATGACATTAGGCCAAGCTGCAGCTTTAACTCGGAGCATGATGGAGAGTTTGAGACAGACCGACTTTCTCTGGTTCAGTCTAAACTGCTGGAGGACTGGCGGCCTGACCCAGAGGCGCCACAAATGAGATCAGATCAGAATGAGAATGCAAATGCTGGACCCAGCCGTAGTCTTGaTGCTCCAGACATGATCTCCGCACCTGTTGGTGGTAATCCTGGCTTCTCAGCCTCCTTCGATGCTCTCTACCAATCAGTAGCCAGAACTCACTTTGTCCATCCTGCTCCTCAAAACGACGATGTCCAGATGAGGACAAACGTCCCCACCAGGATTCACCAGTGTAAAATCTGCGGCCATTCGTTTAGTCGAGCAAGTGATCTGCGCAGACATCATAGTCACCGGCACAGAGTGAGGGTAGCTAACCCAGCTAAAGCAGGAAGTGCAGGTAGACCTGTCAAACAGCAGCTGTTCCCTCCAGGCTGTAGCCCATATCACTGCAACGAATGTGGCCGCGACTTCAACCGCATGGAAAACTTAAAGACGCATTTGCGCATACACACTGGAGAACGTCCGTACTCTTGTTCTGTGTGCGGGGTACGGTTCCGGCACTCAGGGGCACTCACACGCCACTTCCGTATCCACACAGGTGAAAAGCCGTATGTGTGCGGGCAGTGTGGGAAACGTTTCCGGAACTGCGGTGGCCTGCGCTTCCACCAGAAATCCCACACTACAGATAGACACATGGTTTTGAATTGTATTTGAAGAAGATGGATTGTTTTTGGAGTTATTGTATAGTCGTGTGATTTAGGGCTGGCCAGTGTAACCTCAAATCAGCATCttgatcattttaaaccattaccTCGATGACAATATATaagcaggatttttttaaacacgtgTTCAAAATTTCGCTTTTTTAAGTAGGAGCTTTCGCACTAAAGATTTGCTGAAAGATGTTTAAGTATTAAAACTGGAAAATCGTGAGGGCTTTTTGTGAAGAGTTAAAACAAGTATTTGCTCCATTGTAGCTGTGGGATCTGTAGGACGTAATGGCGTTTGTGTGAGTCTTTCCATTTTGagtggtgttaaaaaaaatgcgtGTGTTAGAGACAGCTGTTTTGGGAAATCACGTGAGTGCACTAATAATTTTTGGACTTGCACTCCTCATATTGTACAtgtatgtgttttaaatgaatgagtTAGCTTTGCTTGTTAGCTTTGCTGGCTGAATTGTTTTTCCAACAGTTTACATTTGACACCTCGTCCTATATACTGAACCCAAACCATTAACATTGCAGTGTTTAGTGATTATATGACTGTTCTTGTTCGTCTGTACTCTGGGAAACAGACTAGGAAACTCCTTTGTTTGCACTGAGGAATAACAGAGCAAAGGAGAAGCAAATGGCTGGATATGACAACTGGGTTTTGTATCGATGtttcacaaaaacacatgaTGAGGAAAACCCCGAGTAACATAGCGTTATTGAGAGAAAAGGCCAGTGTTACTATCTTCCATCCATGTCAGTTACGTAAAACTGTATGTAGTCATAACAACAAGTAGTTAAATTGTgacatgtttgaaaatgtacatATAATTGAATAGAAACTTCcagaaattatgaaattttaTCTTTTACGTATACACATTTATAAGCTTTCAGTTTGCTCCCCGCCATAGTAAGTCTTttgctcttcctcttttttatttttttaatggaggCTGGTCAATTGTTGGTTATGacaacaataaaatgtgcaagtACGGGACATGGATATCAACATGAACTTTGCTCAATAAATTTGGAAAGCCA

Function

NR:

description
PREDICTED: zinc finger protein 358-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935817.2 True 2752 mRNA 0.47 3 19867151 19872149

Neighbor

gene id symbol gene type direction distance location
LOC113539894 bank1 coding upstream 172635 19651897 ~ 19694516 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 382005 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 396189 19455026 ~ 19470962 (+)
LOC113540663 cpz coding upstream 459524 19394155 ~ 19407627 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding upstream 474033 19388605 ~ 19393118 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding downstream 9779 19881928 ~ 19886701 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 71591 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 99162 19971311 ~ 19983277 (+)
LOC113540455 NA coding downstream 196912 20069061 ~ 20075035 (+)
LOC113540456 LOC108268101 coding downstream 209621 20081770 ~ 20087305 (+)
trnah-gug_5 NA non-coding upstream 38261 19828819 ~ 19828890 (+)
trnah-gug_4 NA non-coding upstream 38769 19828311 ~ 19828382 (+)
LOC117597044 NA non-coding upstream 42892 19821178 ~ 19824259 (+)
G67287 NA non-coding upstream 44303 19811964 ~ 19822848 (+)
G67289 NA non-coding upstream 100729 19764260 ~ 19766422 (+)
G67579 NA non-coding downstream 7829 19879978 ~ 19881739 (+)
G67582 NA non-coding downstream 16029 19888178 ~ 19888725 (+)
G67594 NA non-coding downstream 39590 19911739 ~ 19914403 (+)
G67595 NA non-coding downstream 44451 19916600 ~ 19917169 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding downstream 90450 19962599 ~ 19965888 (+)
G66864 NA other upstream 1008499 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1658587 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1723520 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1856189 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2247072 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 118535 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 275646 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1148109 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1442069 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1756927 21629076 ~ 21640157 (+)

Expression


Co-expression Network