si:dkey-171c9.3 (LOC108268329)


Basic Information

Item Value
gene id si:dkey-171c9.3
gene name LOC108268329
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12086179 ~ 12093053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935824.2
cattaagcacacacacaggaagtaaaTGTAGGCTCATGAAAGCAACTGTAACCCCATTTTCACTTCCGCTTGGTCTCACAGCAGCATCAAATACAACTTTCCTGTGTGAAGATGGCTGAAGACTGGTTGTGCAGTAGAGTGAAACTTTGTCAGCTGGTCACTGGCCCAAATGTTGATTTATCTAATGTCCAGGATCCAGCTGAAGTGGTTATTAACACCGAGTCATATCCTCCACCTCACTATAATCCATCCTCTATCCTCTTGACATTGGATGCTTTCAGTGCTGCCTTCGATGAATTACGAGGCAGGAGATCAAATGTGAAGATGAACTACATGGATCAGAATGCTCTTGGACCCAACCCAGTTCAGAAAGACGTTGTTCACCACTTTGCTGAGATGTTATCCAGAGATATACTGGATGCAGCTGTGAGGAAACAAGACACTCAGTCCACTAAAGATAGTGATCAAATATGTAACATCATTCAAAGTGAGGTGAGCAGGTGGACAATGAGTGATAAGGAAAAGCTAGCTAAGAGGCTAGCAGCTGAGATCTATAGCAATGCACTGGAAGAACTAGCAAGGCCTGGTTGCCCTGCTGGTAGGAAATCTGATGAACAACTAGATGTGGTtcaaacaacacaaacatttgaaaaagaaatcattAGTGAAATGCACAATGAACCTGCATCCTACCCATGTTCCTCCATGCACCACTGTGACCAAGAAGGACCTACAACAGAAATAGATAGTATCTATCACAGAAGTTCTACGACCAATCCTACCACTCTGGATGATATGGCGCATCTGGGCTCCCTCGACTACCCTGATGCTCCTCCAAGTACGCCATTACTGCCAGAGATGATGAAGAGCCGTTCGAGCTTCACCAGGAAGCTGAAAGGTGGACTCGCTAAGGAGTTCCTACCCTCAACTCCTCCACCCACCCCTAAAGATCAACAATCTCTATTGGACGACAAAATGACTGACAGCACTGTAGACAAATCAGAGTTTATGGTTCGGCTGATGCGTTCGCTCTCATTAGCATGCTCACAGCTTGGGGAAGATAATGgcacagaaaatgaaagcagGTTTCAGACAGAGATTTCAGACTACGCAGCACAGCTCTCAGCAGATATCATCCAGTGCATCACTACAGCCCAAGCAGGCAGCAGTAGAAATATAGAAACGCCCGTCAGAGATGCGCAGGTCCTGGCTGACCACCTGGCAGAGGAGATCATTATAACATCTATAGCAGATGTAATgaggagcaagagagagaacagaacaaGCCAAGAAATCCCATCTTATTTTGAGAACACAACCCAAGCTTTGAGTGATACCTTATCATCTGAGTCAATCCCAGATATTCCTCCTGTGGAGGCTCTGAGAGCCATGGCTGGCAGACTAATCACTAACACACTGGTCCAGGCTTTCTCTGAGCTGGGAAGTGGTTCATTACAGCATGCTACAAGCAAACAGCTACCTGATCCAGCATCAGAGCCAATGCCATGGGAACAAGGGAATGatcaatatttaaatacaagTTTGCACATTAAAAACTCCCAACAAACCCAAACCAATGGATGCTCTAATGTGCAATCAGAGTCTAATGACATCCCACTTGACTCCAGAACTGGGACAGTAGAGCACATTTTTGCTGAGAACATTGTGCATGAAGTGCTCAAGTGCTCCATAAGAGAAGCTTCAAACTGTCACTTAAGGTGCGAACAAACATCCGGTAATTCAGGTAGACTGAGTTCCTCAGTAGCATCACAAGCTGTGATGAGGGCCTTCATATCTGAAACACTGTGCCATGATACACAGGAGCTGCAGTGTGTCCTGCTCTGGGCTGCAGCATCTCAAATGGGAATTTCCACGTTACAGATTGACCTAAATGACAAGCACATTCAGCAACAGCTCTGCAGCATCTGTCTGCAAGCTCAATTTCAAGGCTGGACCGTGGGCCATCTGATGACATCTCTCCTCCAACACTGTGACGATCTGCAGACTGCCAGCAGAGGGCACTCTAAGATTTCAACCTCTCTCCTGGGGCATCTACTGCTCACACAATCATGAGCCGAATGGGTCTGGAATAAAGCTGGAATCAGTTAGGATTGAACATTAGTCAAAAAAAGGATTCTCTGTTATTATGGATTAATATGTGATTGATACAGTGTAATGTGAAATCCACAGATGAGAGCATGGAAATGATTAACGATAAACTGTATTGAATGAGCAGGctgatccaaaaaaaaataataataagttggGTTCAACATAGTATAACACCCATCTGTACTCTCTCCTGGAGTTAGACTTATGATgattaaaacatgataaaatatgCATTCAATTTTGTGCTCAAACACTTAAAGCTGGACATCATTATAGTTGAACATCATTAGCTGACAATCACTTATGATGGAACATCACTCAAATTTAGAACCACTCTCTGTGCCTTTGGATGAATATCGATGATCAGCTCTGCAAGGGAGAATATGAAATTGACTAAAACTGCATTACGCAGAGTATAACACCAGGCTAATCCAGAAAGATGGTCATCAACCTAGCGCAACACCCAGCTGGACACTCAGCTGGGAGGAAACAAGAGTCGAGGCCAACGGCGTTATGAACATCTGCTGAAATTGCTCTCGCCTACGTAACTGCGACATTACGTTAATAAAGGCTGGACATCAGATCAAGGATGAAATAATAAAACGCAGATGGCTGTTCAGTTCTAACTCATTTCATATTAGCACATTAATATGGTCACCCTGACATATCTGACCAGCCCAAATGCTAATCCTGCCCATGAAAAGCTGATACTGATCTCACATcagtgtaaaagtgtaacatctatctatctgtattgTATTAGCAAATATTGTTTCACGCACCAGTGATATCCTAAATATGTTGTTAACGTGGACAATAAAAACGCAATGTTGAAGTGTGTA

Function

NR:

description
uncharacterized protein LOC110500334

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935824.2 True 2954 mRNA 0.43 4 12086179 12093053

Neighbor

gene id symbol gene type direction distance location
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding upstream 262031 11818766 ~ 11824148 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding upstream 369440 11707459 ~ 11716739 (+)
zgc:162171 LOC108267158 coding upstream 448609 11631976 ~ 11637570 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding upstream 466502 11613768 ~ 11619677 (+)
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding upstream 503757 11467950 ~ 11582422 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding downstream 6752 12099805 ~ 12122603 (+)
tifa tifa,LOC100304890 coding downstream 105289 12198342 ~ 12206875 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding downstream 415821 12508874 ~ 12670541 (+)
LOC113540507 LOC108267598 coding downstream 619788 12712841 ~ 12716732 (+)
epoa epo coding downstream 625200 12718253 ~ 12733478 (+)
G63061 NA non-coding upstream 81956 12003990 ~ 12004223 (+)
G62983 NA non-coding upstream 148420 11934829 ~ 11937759 (+)
G62967 NA non-coding upstream 173073 11912850 ~ 11913106 (+)
G62932 NA non-coding upstream 222496 11862633 ~ 11863683 (+)
G62654 NA non-coding upstream 410484 11675313 ~ 11675695 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding downstream 155610 12248663 ~ 12249788 (+)
G63241 NA non-coding downstream 262497 12355550 ~ 12357681 (+)
G63242 NA non-coding downstream 264779 12357832 ~ 12358248 (+)
LOC113540557 NA non-coding downstream 675532 12768585 ~ 12772822 (+)
G63547 NA non-coding downstream 708841 12801894 ~ 12834330 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 380843 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 480949 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 1422768 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1590709 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1594310 10491797 ~ 10491869 (+)
si:dkey-112a7.4 LOC108268066 other downstream 199438 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1113604 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1182409 13275462 ~ 13285834 (+)
G63903 NA other downstream 1325324 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 1375499 13468552 ~ 13475037 (+)

Expression


Co-expression Network