prmt5 (prmt5,LOC107694666,LOC107668985,LOC107558089)


Basic Information

Item Value
gene id prmt5
gene name prmt5,LOC107694666,LOC107668985,LOC107558089
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31548280 ~ 31560707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935828.2
GTCACTTTCCGTTGAGCCAACATGGCGGCCATTTCTGTATAGCGGTGTGGCTgacttttcctttttccctccCATCTCTGCTGTAAACCATGGCGTCCGCCAGCACAGGGAGCAGGGTGTCCTGCGGGAGAGATTTAAGTTGTGTTCCTGAGGTGGCAGATACACTCGCCGCAGTCGCAAAACTAGGCTTCGACTTCCTGTGCATGCCCCTCTTCCATCCTCGTTTCCGGAGAGAGTATGAACTGGACCCTGCCAAGGCCAGACCCGGAGCTCAGACCCGCTCTGACCTGCTGCTGTGTGGACGCGaCTGGAACACACTCATTGTGGGGAAGCTCTCACCATGGATAGATGCCGACTCCGAACTGACCACAGAGCGCAGGAACTCCGAGGCCGCGCTGGTCCAGGAGCTGAATTTCTGTGCCTACCTGGGGTTACCCGCCTTCATGATCCCACTGAGGGGCGCGCAGTGTGCCAACTTGGCCCGAGTCCTGCTAAACCACCTACATACCGGACACCATTCTTCCATGTTCTGGATCCGAGTTCCCCTGTTAGCACCCGAGGACACTCGTGAAGACCTCGTTGTTAACGAGCCAAGTAAACAAATAGACGATGCTGACAATGAAGAGAAAACCTGGGGCTGGTGGCATTCATTCAGAACACTTTGCGACTACAACAAAAGGATTTGTCTTGCCATTGAGATCGGTGCGGACATTCCCTCTgacactgtgattgacaagtgGCTTGGGGAACCAATCAAAGCTGCCATTCTTCCCACCAGCATATTCCTGACCAATAAGAAAGGGTTTCCGGTGCTCTCAAAAGCCCATCAGCGAATCATATTTCGCCTCTTCAAGCTCGAGTCTCAGTTTATATTTACCGGGACGAGTCGCCACAGCGAGAAGGACTTCCGCACCTATCTGCAGTACCTAGAATACCTCAACCAGAACCGGCCAGCACCCAACGCTTATGAGCTGTTTGCCAAGGGATACGAGGACTACCTGCAGTCACCGCTACAGCCTCTGATGGACAATTTGGAGTCACAGACGTACGAGGTTTTTGAAAAAGACCCCATTAAGTATTCGCAGTACCAGCAGGCGGTGTATAAATGTCTGCTAGACAGAGTTCCAGAAGAGCAAAAAGAAACCAACGTACAAGTGCTGATGGTGCTGGGTGCTGGACGCGGCCCTCTGGTGAACGCCTCGCTACGTGCCGCCAAGCAGGCGGACAGAAAGCTGCGTGTGTATGCCGTGGAGAAGAACCCCAATGCCGTTGTCACGCTGGAGAACTGGAAGTTTGAAGAATGGGGAGATCAGGTGACCGTTATATCATGTGACATGCGGGAGTGGACAGCTCCAGAGAAAGCAGACATCATTGTCAGTGAGCTTTTAGGATCGTTCGGTGATAATGAGCTTTCACCTGAGTGCCTTGATGGAGCACAGCACTTTCTCAAAGaagACGGAGTGAGTATTCCCTGCTCCTACACCTCGTTTTTGGCTCCTCTGTCCTCGTCGAAGCTGTATAACGAAGTGCGAAGCTGTCGGGAGCGGGACAAGGACCCCGAGTGCCATTTTGAAACCCCGTATGTAGTGAGGCTGCACAACTTCCACCAGCTTGCTGACCCCAAACCCTGCTTTACCTTCGTACACCCAACTACAGataTGAACAACAACAGATATCAGTGTCTGCGTTTCACCGTGTCCTGTAACTCTGTGCTTCACGGTTTTGCTGGATATTTTGAGACCACGCTGTACAAAGACGTTATGCTTAGTATTAGACCAGAGACCCACTCACCCGGAATGTTCTCCTGGTTCCCAATCCTCTTTCCTCTCAAACAACCCATTCCCCTGTCTGGCGGCGATGACGTGAGTGTGAAGTTCTGGAGGTGTAACAACGGGAAGAAGGTGTGGTACGAGTGGGCCGTCACTGAGCCCATCTGCTCGGCCATTCACAACCCCGCGGGACGGTCTTACACTATCGGCTTGTAGAGGGAGACATGTACTATGTTGTTTTGGTCTCTAGTAATAACGTACAGTGCAGCACTTGGTGATAGATTTGGTCAGTTTTgagcatgactttttttttggttacagTTTACAGGTAACACTTGAGAATCTGGGCTTATTGTCACTACACCCACTGAAAGTTTTCTAATCTTGGTTCTGTGCACTGAACTGCCAAGTTCGTAGGACATCCAGACAGTCCCAAAGCTAGataattaaactgaattttttttattgtcataacTCCCTTTTCGTACTGTTTTATGTTCTTCCTGATGACACTTGTCATatgacatgaataaaaaaaaaaaatcatactgtt

Function

symbol description
prmt5 Enables histone methyltransferase activity and protein-arginine omega-N symmetric methyltransferase activity. Involved in histone H4-R3 methylation and peptidyl-arginine methylation, to symmetrical-dimethyl arginine. Acts upstream of or within regulation of skeletal muscle fiber development. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including heart; liver; pleuroperitoneal region; segmental plate; and shield. Orthologous to human PRMT5 (protein arginine methyltransferase 5).

NR:

description
PREDICTED: protein arginine N-methyltransferase 5

GO:

id name namespace
GO:0048742 regulation of skeletal muscle fiber development biological_process
GO:0006479 protein methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function

KEGG:

id description
K02516 PRMT5, HSL7; type II protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935828.2 True 2322 mRNA 0.50 16 31548280 31560707

Neighbor

gene id symbol gene type direction distance location
si:ch211-119o8.6 LOC108268351 coding upstream 304201 31239568 ~ 31244079 (+)
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding upstream 311379 31222287 ~ 31236901 (+)
LOC113540056 LOC108267180 coding upstream 327260 31218928 ~ 31221020 (+)
clstn2 clstn2,LOC107668970,LOC107738117 coding upstream 335947 31130107 ~ 31212333 (+)
slc25a36a slc25a36,slc25a36a,LOC108440632,LOC107668959,LOC107706334,LOC107694658 coding upstream 519404 31005423 ~ 31028876 (+)
ap1g2 LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629 coding downstream 5574 31566281 ~ 31581540 (+)
zp3f.2 NA coding downstream 23393 31584100 ~ 31586755 (+)
LOC113540625 LOC108267346 coding downstream 26554 31587261 ~ 31594687 (+)
dhx9 dhx9 coding downstream 35807 31596514 ~ 31610197 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding downstream 59138 31619845 ~ 31684467 (+)
LOC117597165 NA non-coding upstream 1485 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 15057 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 17084 31524103 ~ 31531196 (+)
G74315 NA non-coding upstream 20210 31527856 ~ 31528070 (+)
G74199 NA non-coding upstream 192159 31355554 ~ 31356121 (+)
G74370 NA non-coding downstream 146521 31707228 ~ 31707436 (+)
G74384 NA non-coding downstream 173949 31734656 ~ 31743095 (+)
LOC113540254 NA non-coding downstream 217414 31778121 ~ 31847866 (+)
LOC117597031 NA non-coding downstream 299253 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 385341 31946048 ~ 31946542 (+)
c4h22orf39 c7h22orf39 other upstream 195136 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 450351 31061730 ~ 31097929 (+)
G73944 NA other upstream 781148 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1069987 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1867105 29673514 ~ 29681175 (+)
LOC113540067 NA other downstream 199182 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 398315 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 400162 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 406492 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 410227 31970934 ~ 31972279 (+)

Expression


Co-expression Network