rgs18 (LOC108268317,LOC108428888)


Basic Information

Item Value
gene id rgs18
gene name LOC108268317,LOC108428888
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29967671 ~ 29976291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935838.2
GGTAGTTCCCATTGAACAGGAAGTGTTAACGACAGGTATGGGAAATGACCTGCCAGATACCAATCCGTGCTTTGAGGATTTGCGGTTAAATAAGATTGATGTCCTGCTGTCTAGCTtcatgagtgagagagacagagagggagagtgagacggGGAAAAGCATGGAGAcctttgtctttctgtttcctCAATTCGACTTCTCTGCCCCCAAGGAGGAAGTGTGTTTCAAAATGCTCGGCGAGACCGTGTGGCGTGCTACCAGAATGAAAGACAGCCACTCAAGAAATAAGGACAAGGACAAAGATAAGGACAAGGACAAAAAGTATAGACTCAGTCTTCTGATGACCAGGTCTGGATCGCATGAAAATGTGAGCCCAGAGAAAAAGGCGCCAAGTAAAACCATTCAcatTCCACCTGAGGTCGCTTTGAGATGGAGCGATTCCTTTGAAGATCTGCTGGCACATCCAGATGGAGTGGAGACCTTCACGCAGTTCCTGCGCTCCGAGTTCAGCGAGGAGAACATCGAGTTCTGGTTAGCGTGTGAGGATTACAAGAGCACAGCGTCCCCTGCCAATCTGCAATCCAAAGCCAAGCAAATGTATGCAGTATTTATTGACGCCGCGGCGCCCAAAGAGATTAACATCGACCATTCAACCAAGCTGGACATACAGAAGAACATCGCACAACCGACGCAGTCATGTTTCGATTCAGCGCAGAGCAAAATCTACGCCTTGATGAAGAAGGACTGCTACCCACGCTTCCTCACCTCAGACATCTACCTGAGCCTGACCAAGAGGAAAGCGCCTCCTGCCATGACCAGGAGAAGGTCTCGATCTTTTGTCTTCAGTGACCGCGAAGATAACGCAGCAGCCTGGTTGTAGCTCCTCAATGACAGTTAGTATAATAGTTTCTACAGTCGTAGCTGTGCATCTTTCACACTCAGTGCCTTGCTAGATGTGCGTTGGACAGTATTTTTTTCCCTGGGTCAGCAAAAGAGTTGAGCTTAGATTCCAATTTCAACGATCGCAGATTGGATCAAATGATATCACCGTCAACATGGCTTCATTTCAGTGTATTCGCTTAGCATAAAATATTGGTTTTATATGCCAGTAAAGTTAGATAGTGGGCAGGCAGCTACGTACAGGACTGTGTTAACGTTACCGAGCTAAATATCGAACTTGGACAACGTCAACATTATGTTTCTAGCAGTAGCTTATATTGTGTAGCTATCCAAGTTCACTAGCGAGCtaaattaattgttttaagGTCAGATGGTGTTTTTCCGTAACGGCaattctgacagtagtgccggctgcTAGGCAAATcccaggcttatattaatgcgcttgttctaatgcgttatcgtttccatagtaacagcgcATTCGCAGGGACTTCTATCAACgatgatttgcataatctaaggctaaaataaatggattaaaaatgttaacaaatgttaaAGTTATCGATTGATATCGgaaggttttctgtaaggagatgtttatttaacatttatggaaggagtctccagtgccagagctttgtaacagtcatgggaaagtctttaggatggaggagtttgcagtttcttagtaacatgacaagctgcttttttttgtgtgtgtgtgtgcatgtgtgtgtgtgcaggtgtgtgttattaattttaagagagaggtgagagaacgtctgtttatagctgctacaacgtgCGTGATAACTTGTTTCGcaacattaatgtaactatataaTTCGGGACGTGAtggtgtaggaaaataatcagcttctaggtaacagtaactcaacAGTAACACATCAAGCTACGTGACaacaccctgtcgttgattattctcctataactgcacacccagagtgtttcattctttacttACAGCAGAATTTAAACCAGGAGCCAAAGTCACACGCAAGCTAGCTAATCACAGATAAAGTATTGTAGCCACTGATTACGTTtaacttaagctccgccccttgtTGTCCCAAGAACTCCTGTCACTATGGAAAATCAGGGTGTTCACGATGATTCATACATATCAGTAtcgaagttgttttttttttttttttttaaataaaatatctgtttacACAAGTGCAAGTATTAAACTCTGACCCAGAAATTTAGCTTCTTGCTATGAGAAGCTATGAGAAGATTTTATCAAAGCAATGCAGAAATATTAAGGACTAAACTATCTCACATTTCCTTCCTGTCTATACTATTGTATTATTCAACACCTAATATACATATTagcattgtttttgttgtttttattttacattaggACTTATTTACATTCAAGTACTAATCCAAGCCATGAATTATTTATTGACTAAAACTTTTCCCTTTGCCGAGAGTTTCATGTTAATCTATTTCTATCTACATGATTACGATCTTAGCTTTAATTTGTAAATTGTATATACAACCTGTGTGATAAATCATTGTATAATAAAAGCGTTTCTCAATAAACGATTCATGATCTTGATGGAGCTCCGCTTCATGTCGGGGCGCACATTGCGCCacaccattgttgattatttcctataacagcatgcccctatgtgttttatttcttttatatttattggcGTAAATTCTACGGTTTCGGGTGGGACgattgttattaaaataaacatttcatctCTGACTGAAATTATCCATGAACAAAGTCTGTTTCAAAATGAACTGATTTCAGGAATTgtaaagaaatgagaaagagaaagaatgagaaataaCAATATTGTCCTTTCCTTACAAGCACTGTAATTAATGGATTGATAAAGACTTTTAACATGAAAAGC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0071599 otic vesicle development biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0048840 otolith development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935838.2 True 2814 mRNA 0.40 5 29967671 29976291

Neighbor

gene id symbol gene type direction distance location
LOC113539887 dbt,LOC108267843,LOC108411488 coding upstream 206699 29752071 ~ 29760972 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding upstream 246903 29704488 ~ 29720768 (+)
LOC113540482 LOC108267690 coding upstream 364841 29596466 ~ 29602830 (+)
LOC113540073 NA coding upstream 408546 29554015 ~ 29559125 (+)
ccdc39 ccdc39 coding upstream 414124 29541983 ~ 29553547 (+)
rgs1 LOC108267137 coding downstream 9894 29986185 ~ 29989435 (+)
rgs13 LOC108268340 coding downstream 22213 29998504 ~ 30001345 (+)
blvra blvra coding downstream 38364 30014655 ~ 30022571 (+)
ebi3 LOC108267125 coding downstream 69604 30045895 ~ 30050490 (+)
keap1a keap1a,LOC108268010,LOC108428896,LOC107721712,LOC107690048,LOC107588875,LOC107749088 coding downstream 121414 30097705 ~ 30109835 (+)
G73512 NA non-coding upstream 37503 29929938 ~ 29930168 (+)
G73185 NA non-coding upstream 173466 29792516 ~ 29794205 (+)
G73169 NA non-coding upstream 201565 29765120 ~ 29766106 (+)
G73155 NA non-coding upstream 234308 29732651 ~ 29733363 (+)
G73123 NA non-coding upstream 243921 29722066 ~ 29723750 (+)
G73533 NA non-coding downstream 56019 30032310 ~ 30032788 (+)
G73564 NA non-coding downstream 108147 30084438 ~ 30084819 (+)
G73545 NA non-coding downstream 134321 30110612 ~ 30111156 (+)
G73567 NA non-coding downstream 136098 30112389 ~ 30112630 (+)
G73568 NA non-coding downstream 141715 30118006 ~ 30118492 (+)
zgc:153115 LOC108268059 other upstream 286496 29673514 ~ 29681175 (+)
asip2b NA other upstream 343874 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 771522 29181767 ~ 29196149 (+)
G72873 NA other upstream 1055567 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 1170512 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 478466 30454757 ~ 30478293 (+)
G73944 NA other downstream 769840 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1085439 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1374910 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1783598 31759889 ~ 31776798 (+)

Expression


Co-expression Network