zgc:110366 (LOC108267892,LOC108437513)


Basic Information

Item Value
gene id zgc:110366
gene name LOC108267892,LOC108437513
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29724588 ~ 29730857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935844.2
GCTTTACGACACCTCTGGCTGCTTATTGGACACGGCACATATTTCTCCGCATGAAGAGTTTTGGTATGAAAGAAGCCGCTTTTTGTTTCTCCAATGCAGCATTTCCCAGACGTTGAGCTTTCCAATAGACTGAAAATCCCAATCCTAGGTTTAGGAACATCGCACAATGGTGGCTACTCCCACGATGCAGTCGTCTACGCGCTCCAGCAGTGCAGCATCAGGCACATAGACACGGCTAAAAGATACGGCTGTGAAGAAGCCTTGTGTAAGTCAATCGTGGAGAGCCGAGTCCCACGTGAAGATCTGTGGATCACCACCAAGCTGTGGCCAGGGGATTATGGGTATCAGAGCGCCAAGGAGGCCTGTCGGGCCTCGTGTGCCAGACTCGGGGTCGAGTATTTAGATCTGTACCTAATGCACTGGCCTGACTGCGGCGTTCCGGGCCGCTCCAACAGGGACGTCCGAGCCGACACGTGGAGAGCTCTGGAGGAGATGTACGACGAAGGATTGTGCCGTTCCATCGGCGTGAGCAACTTCCTGATCCCACATCTCGAGGAACTGAAAGAGGACGGTGGCGTGATGCCTCACGTTAACCAGGTGGAGTTTCATCCGTTTCAGCAGCCGTGGCAGCTGGTGGAGTTTTGCCGCAGCGAGGGCGTAGCGTTTGAGGGTTACTGCCCTCTAGCTAAGGGTCAAGCGCTCCATCATCCACTCATCGTGGAACTGGCGCAGAAGTACGGACGCAGTGCTTCACAGATCTGCATCCGCTGGAGCATTCAGAATCGGATCATCACCATCCCAAAGTCTACCAAACCTGATAGGATTCTTGAAAACTGCCAAGTCTTTGGGTTCACGCTGGCTGAAGAGGACATGGAGAGTATCGGGCGACTACATGCAGACAAAAAGCTTATTCATCTCAGCTACCCGCTCTGGAACGGATAACGAGAACGGGGCAGCGGGTTCGGCTTTGTGAATTTTTAGACATACCCTAGATCTCCTGCGCACATCACACAGGATGGCTCCGTGGAGCACATTATGTCCCAAATTCTGATCATTCTGATTTCCCTGATTAACAAGACAAATGAACCAGGTCATGTAGCTGGCTTGGAAATTGGAAAGATGAGAAGATTTACAGAAGATTTATTTGAGAAGATTTACAGTTACATCTAGAGTGTGAACCAGTTTGGTTCATCCTTTTGGGAAACCCCATGGAGGAATTTTCTAGAATCCTTCAACTTTTTTTACTTCAAAAAGTTTAGCTCACGAAGGAACGCTTGAAGAACCACCAGCGTTATTGCTTTTGGGCATGGCATCTTCTCCGTAAGCCATCAGACGGTCGATCTTACACTCAGGTGGCCATGTGTGAGGTgttgagtcttttttttcccagatgtcaaagaaattaaatgcatCTAAGCTACTTTCGGACAAAAGTCAATAATAGCTATAGCTATGCAAGTGCAAGCACAATGTCACTcatttaatgaaacatttcaaaatcctgtattttataatgaaataaatccgCACAGACTTAAGTGTCAATATTGTTTAA
>XM_026935845.2
GCTTTACGACACCTCTGGCTGCTTATTGGACACGGCACATATTTCTCCGCATGAAGAGTTTTGGTATGAAAGAAGCCGCTTTTTGTTTCTCCAATGCAGCATTTCCCAGACGTTGAGCTTTCCAATAGACTGAAAATCCCAATCCTAGGTTTAGGAACATCGCACAATGGTGGCTACTCCCACGATGCAGTCGTCTACGCGCTCCAGCAGTGCAGCATCAGGCACATAGACACGGCTAAAAGATACGGCTGTGAAGAAGCCTTGTGTAAGTCAATCGTGGAGAGCCGAGTCCCACGTGAAGATCTGTGGATCACCACCAAGCTGTGGCCAGGGGATTATGGGTATCAGAGCGCCAAGGAGGCCTGTCGGGCCTCGTGTGCCAGACTCGGGGTCGAGTATTTAGATCTGTACCTAATGCACTGGCCTGACTGCGGCGTTCCGGGCCGCTCCAACAGGGACGTCCGAGCCGACACGTGGAGAGCTCTGGAGGAGATGTACGACGAAGGATTGTGCCGTTCCATCGGCGTGAGCAACTTCCTGATCCCACATCTCGAGGAACTGAAAGAGGACGGTGGCGTGATGCCTCACGTTAACCAGGTGGAGTTTCATCCGTTTCAGCAGCCGTGGCAGCTGGTGGAGTTTTGCCGCAGCGAGGGCGTAGCGTTTGAGGGTTACTGCCCTCTAGCTAAGGGTCAAGCGCTCCATCATCCACTCATCGTGGAACTGGCGCAGAAGTACGGACGCAGTGCTTCACAGATCTGCATCCGCTGGAGCATTCAGAATCGGATCATCACCATCCCAAAGTCTACCAAACCTGATAGGATTCTTGAAAACTGCCAAGTGTTTGGGTTCCAGCTGGAAGACACTGACATGGCTGCCATGCACGCGTTGCATGATGGGAGGCGCGTGAGCTGGGACCCAACCCACGTGGAGTGAGCACGCTGGTGTCTTTGGGTTCACGCTGGCTGAAGAGGACATGGAGAGTATCGGGCGACTACATGCAGACAAAAAGCTTATTCATCTCAGCTACCCGCTCTGGAACGGATAACGAGAACGGGGCAGCGGGTTCGGCTTTGTGAATTTTTAGACATACCCTAGATCTCCTGCGCACATCACACAGGATGGCTCCGTGGAGCACATTATGTCCCAAATTCTGATCATTCTGATTTCCCTGATTAACAAGACAAATGAACCAGGTCATGTAGCTGGCTTGGAAATTGGAAAGATGAGAAGATTTACAGAAGATTTATTTGAGAAGATTTACAGTTACATCTAGAGTGTGAACCAGTTTGGTTCATCCTTTTGGGAAACCCCATGGAGGAATTTTCTAGAATCCTTCAACTTTTTTTACTTCAAAAAGTTTAGCTCACGAAGGAACGCTTGAAGAACCACCAGCGTTATTGCTTTTGGGCATGGCATCTTCTCCGTAAGCCATCAGACGGTCGATCTTACACTCAGGTGGCCATGTGTGAGGTgttgagtcttttttttcccagatgtcaaagaaattaaatgcatCTAAGCTACTTTCGGACAAAAGTCAATAATAGCTATAGCTATGCAAGTGCAAGCACAATGTCACTcatttaatgaaacatttcaaaatcctgtattttataatgaaataaatccgCACAGACTTAAGTGTCAATATTGTTTAA
>XR_003403975.2
CGCTTTACGACACCTCTGGCTGCTTATTGGACACGGCACATATTTCTCCGCATGAAGAGTTTTGGTATGAAAGAAGCCGCTTTTTGTTTCTCCAATGCAGCATTTCCCAGACGTTGAGCTTTCCAATAGACTGAAAATCCCAATCCTAGGTTTAGGAACATCGCACAATGGTGGCTACTCCCACGATGCAGTCGTCTACGCGCTCCAGCAGTGCAGCATCAGGCACATAGACACGGCTAAAAGATACGGCTGTGAAGAAGCCTTGTGTAAGTCAATCGTGGAGAGCCGAGTCCCACGTGAAGATCTGTGGATCACCACCAAGCTGTGGCCAGGGGATTATGGGTATCAGAGCGCCAAGGAGGCCTGTCGGGCCTCGTGTGCCAGACTCGGGGTCGAGTATTTAGATCTGTACCTAATGCACTGGCCTGACTGCGGCGTTCCGGGCCGCTCCAACAGGGACGTCCGAGCCGACACGTGGAGAGCTCTGGAGGAGATGTACGACGAAGGATTGTGCCGTTCCATCGGCGTGAGCAACTTCCTGATCCCACATCTCGAGGAACTGAAAGAGGACGGTGGCGTGATGCCTCACGTTAACCAGGTGGAGTTTCATCCGTTTCAGCAGCCGTGGCAGCTGGTGGAGTTTTGCCGCAGCGAGGGCGTAGCGTTTGAGGGTTACTGCCCTCTAGCTAAGGGTCAAGCGCTCCATCATCCACTCATCGTGGAACTGGCGCAGAAGTACGGACGCAGTGCTTCACAGATCTGCATCCGCTGGAGCATTCAGAATCGGATCATCACCATCCCAAAGTCTACCAAACCTGATAGGATTCTTGAAAACTGCCAAACTGCCTCTGCATGCACAGGTGTTTGGGTTCCAGCTGGAAGACACTGACATGGCTGCCATGCACGCGTTGCATGATGGGAGGCGCGTGAGCTGGGACCCAACCCACGTGGAGTGAGCACGCTGGTGTCTTTGGGTTCACGCTGGCTGAAGAGGACATGGAGAGTATCGGGCGACTACATGCAGACAAAAAGCTTATTCATCTCAGCTACCCGCTCTGGAACGGATAACGAGAACGGGGCAGCGGGTTCGGCTTTGTGAATTTTTAGACATACCCTAGATCTCCTGCGCACATCACACAGGATGGCTCCGTGGAGCACATTATGTCCCAAATTCTGATCATTCTGATTTCCCTGATTAACAAGACAAATGAACCAGGTCATGTAGCTGGCTTGGAAATTGGAAAGATGAGAAGATTTACAGAAGATTTATTTGAGAAGATTTACAGTTACATCTAGAGTGTGAACCAGTTTGGTTCATCCTTTTGGGAAACCCCATGGAGGAATTTTCTAGAATCCTTCAACTTTTTTTACTTCAAAAAGTTTAGCTCACGAAGGAACGCTTGAAGAACCACCAGCGTTATTGCTTTTGGGCATGGCATCTTCTCCGTAAGCCATCAGACGGTCGATCTTACACTCAGGTGGCCATGTGTGAGGTgttgagtcttttttttcccagatgtcaaagaaattaaatgcatCTAAGCTACTTTCGGACAAAAGTCAATAATAGCTATAGCTATGCAAGTGCAAGCACAATGTCACTcatttaatgaaacatttcaaaatcctgtattttataatgaaataaatccgCACAGACTTAAGTGTCAATATTGTTTAA

Function

NR:

description
uncharacterized oxidoreductase ZK1290.5-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935844.2 False 1555 mRNA 0.48 7 29724588 29730856
XM_026935845.2 False 1661 mRNA 0.49 8 29724588 29730856
XR_003403975.2 True 1681 misc_RNA 0.49 8 29724588 29730857

Neighbor

gene id symbol gene type direction distance location
si:ch211-13f8.1 LOC108267891 coding downstream 18906 29693378 ~ 29705682 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding downstream 32033 29681244 ~ 29692555 (-)
LOC113539879 LOC108267234 coding downstream 57733 29629970 ~ 29666855 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 131761 29576698 ~ 29592827 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding downstream 193907 29519091 ~ 29530681 (-)
cdc14aa LOC108267888,LOC108411489 coding upstream 1408 29732265 ~ 29748113 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding upstream 35351 29766208 ~ 29794142 (-)
ddr2b LOC108267138 coding upstream 66213 29797070 ~ 29812557 (-)
nos1apb LOC108267139 coding upstream 82670 29813527 ~ 29825141 (-)
rgs5b LOC108267191 coding upstream 102805 29833662 ~ 29835191 (-)
G73459 LOC108267889 non-coding downstream 10178 29713999 ~ 29714410 (-)
G73458 LOC108267889 non-coding downstream 11142 29712893 ~ 29713446 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding downstream 12394 29711086 ~ 29712194 (-)
G73452 LOC108268059 non-coding downstream 50318 29671187 ~ 29674270 (-)
G73439 NA non-coding downstream 116783 29607601 ~ 29607805 (-)
G73479 NA non-coding upstream 32648 29763505 ~ 29763791 (-)
G73448 NA non-coding upstream 34267 29765124 ~ 29765632 (-)
G73444 NA non-coding upstream 34890 29765747 ~ 29766115 (-)
G73481 NA non-coding upstream 47698 29778555 ~ 29780132 (-)
G73485 NA non-coding upstream 61355 29792212 ~ 29793644 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 148861 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 552667 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 839623 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 932759 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 1072163 28648324 ~ 28652425 (-)
G73619 blvra other upstream 288649 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1010670 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1042592 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1516203 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 2139661 31870518 ~ 31871874 (-)

Expression


Co-expression Network